Jatropha Genome Database

JcCB0457001.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0457001.10 + phase: 0 /partial
         (555 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09378                                                            710   0.0  

>KJC_c09378 
          Length = 601

 Score =  710 bits (358), Expect = 0.0
 Identities = 365/366 (99%), Gaps = 1/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 190 ggtgccttggacacaattcatgagattcttgaaaggttagaggcacatttgagagcagtt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggtgccttggacacaattcatgagattcttgaaaggttagaggcacatttgagagcagtt 541

                                                                       
Query: 250 ggtcagttcacggtaaccgcaaacatgagaggaagtagtgcagaggaagtggctgaacgt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggtcagttcacggtaaccgcaaacatgagaggaagtagtgcagaggaagtggctgaacgt 481

                                                                       
Query: 310 gtactgagccagccatctttatctgggttgcaggggcctactgtaagtcctgttttctgc 369
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 480 gtactgagccagccatctttatctgggttgcaggg-cctactgtaagtcctgttttctgc 422

                                                                       
Query: 370 aaacgtgatggaaaggtttcaccagattactatgctatagtcatttgtgtcccaaaaaag 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaacgtgatggaaaggtttcaccagattactatgctatagtcatttgtgtcccaaaaaag 362

                                                                       
Query: 430 gcattatacaagtctgtacagcaactaagagcgattggaggtagtggagttctaatttct 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcattatacaagtctgtacagcaactaagagcgattggaggtagtggagttctaatttct 302

                                                                       
Query: 490 cctttaacctatattttcgaagaagagactccaagatggcgccagcttctttcaaaactt 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cctttaacctatattttcgaagaagagactccaagatggcgccagcttctttcaaaactt 242

                 
Query: 550 gggctg 555
           ||||||
Sbjct: 241 gggctg 236