Jatropha Genome Database

JcCB0456151.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0456151.10 + phase: 1 /partial/short
         (121 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06708                                                            188   2e-48
KJC_c04665                                                             52   3e-07

>KJC_c06708 
          Length = 440

 Score =  188 bits (95), Expect = 2e-48
 Identities = 95/95 (100%)
 Strand = Plus / Minus

                                                                       
Query: 27  cctcaaattcaaaagcaagccaagctacaacttccaagggaactacggaacaatcaaagc 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 cctcaaattcaaaagcaagccaagctacaacttccaagggaactacggaacaatcaaagc 173

                                              
Query: 87  cttcatccaagtcatcaaggaagaagtccaggaat 121
           |||||||||||||||||||||||||||||||||||
Sbjct: 172 cttcatccaagtcatcaaggaagaagtccaggaat 138


>KJC_c04665 
          Length = 1439

 Score = 52.0 bits (26), Expect = 3e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 1   ttctccatgcgaataagatggaccag 26
           ||||||||||||||||||||||||||
Sbjct: 885 ttctccatgcgaataagatggaccag 910