Jatropha Genome Database

JcCB0450851.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0450851.10 + phase: 1 /pseudo/partial
         (467 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08648                                                            735   0.0  

>KJC_c08648 
          Length = 755

 Score =  735 bits (371), Expect = 0.0
 Identities = 381/383 (99%), Gaps = 1/383 (0%)
 Strand = Plus / Plus

                                                                       
Query: 42  ctagtgaagctacttgaactgagggaggccaatcatattgagttttgcagaataaaaaat 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 161 ctagtgaagctacttgaactgagggaggccaatcatattgagttttgcagaataaaa-at 219

                                                                       
Query: 102 gtgcttgatgagatattgcacatgcataggaacttggagctcactgaaatcctaaaatca 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gtgcttgatgagatattgcacatgcataggaacttggagctcactgaaatcctaaaatca 279

                                                                       
Query: 162 ttaatggatcctacatgggtggcaactggattgaaaattgacttcgagacattagtcaat 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttaatggatcctacatgggtggcaactggattgaaaattgacttcgagacattagtcaat 339

                                                                       
Query: 222 gaatgtgaatgggcttcagatagaatttgtgaaatgatctatctagaagataaaattgac 281
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 gaatgtgaatgggcttcagatagaatttgtgaaatgatctatctagaagataaatttgac 399

                                                                       
Query: 282 cgaaagtcagattcccattctgtcgttcctagtgaattttttgaggatatggagttgtct 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cgaaagtcagattcccattctgtcgttcctagtgaattttttgaggatatggagttgtct 459

                                                                       
Query: 342 tggagaggtcgtgtaaagaggatccatatagaggaagaatttgcagaagtggaaagtgca 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tggagaggtcgtgtaaagaggatccatatagaggaagaatttgcagaagtggaaagtgca 519

                                  
Query: 402 gcacaggccttgtcatcagcagt 424
           |||||||||||||||||||||||
Sbjct: 520 gcacaggccttgtcatcagcagt 542