Jatropha Genome Database

JcCB0444751.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0444751.10 + phase: 0 /pseudo/partial
         (291 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06093                                                            285   3e-77

>KJC_c06093 
          Length = 602

 Score =  285 bits (144), Expect = 3e-77
 Identities = 151/152 (99%), Gaps = 1/152 (0%)
 Strand = Plus / Minus

                                                                       
Query: 67  actccatatggtattctcatcccccattcagagtccatcacctagctaggcgtactatgg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 actccatatggtattctcatcccccattcagagtccatcacctagctaggcgtactatgg 543

                                                                       
Query: 127 tattcgagtgggacaatgaatatgatagtagcggcttaaagcttttgacagttgatatca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tattcgagtgggacaatgaatatgatagtagcggcttaaagcttttgacagttgatatca 483

                                           
Query: 187 tgtaccagccggatgggaactatttgatcaag 218
           |||||||||||||||||||| |||||||||||
Sbjct: 482 tgtaccagccggatgggaac-atttgatcaag 452



 Score =  145 bits (73), Expect = 7e-35
 Identities = 73/73 (100%)
 Strand = Plus / Minus

                                                                       
Query: 219 tctgcatgatgacaattttcgagttgaggctgatggtataagcatgaatgttaatttggc 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tctgcatgatgacaattttcgagttgaggctgatggtataagcatgaatgttaatttggc 348

                        
Query: 279 tgcgtattcaaag 291
           |||||||||||||
Sbjct: 347 tgcgtattcaaag 335