Jatropha Genome Database

JcCB0443791.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0443791.10 + phase: 0 /partial
         (1437 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04580                                                             64   1e-09
KJC_c09795                                                             58   6e-08

>KJC_c04580 
          Length = 623

 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 141/176 (80%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                       
Query: 299 gttgcagcagacctcgcttggctggtgctggaaggctatcttacagctatcttgatatag 358
           ||||||| |||||||  || |||||||||| ||| || || ||||  ||| | ||| |||
Sbjct: 398 gttgcagtagacctccattagctggtgctgcaagactttcatacaattatttagatgtag 457

                                                                       
Query: 359 cttttacaccatatggagattactggagagaaatgagaaagatttgtgtacttca-actt 417
           ||||| |||||||||| |||||||||||||| || || |  || ||||| ||| |  |||
Sbjct: 458 ctttttcaccatatggtgattactggagagagattaggagaatatgtgttcttgagtctt 517

                                                                   
Query: 418 tttagcgctaaaagagttcaatcattccagtcctttagagaagaagaagtgggttt 473
           |||||| | ||||| || || || || |||| | |||||||||||||||| |||||
Sbjct: 518 tttagcacgaaaagggtgcagtcgtttcagttcgttagagaagaagaagttggttt 573


>KJC_c09795 
          Length = 468

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                        
Query: 1125 aattcatcccaaaactcgaatccaggtcaatgtgtgggcgataggaagagaccctaaacc 1184
            ||||||||| ||||| | |||||| || ||||| ||||| || ||| |||| || ||   
Sbjct: 366  aattcatccaaaaacactaatccaagtaaatgtttgggcaatcggacgagatcccaacta 307

                                                                        
Query: 1185 ttggaaaaatcctgaagaattctttccagaaagatttatagataattccattgattttag 1244
             ||||| || || ||||||||||| || ||||||||| | ||||  ||||||||||||| 
Sbjct: 306  ctggaagaacccagaagaattcttccctgaaagatttgtggatagctccattgattttaa 247

                                                                 
Query: 1245 agggcagaattatgaattgttaccatttggaggtggcaggagaggctgtcctg 1297
            ||| || |||| ||| ||  | |||||||||| ||| || ||||| |||||||
Sbjct: 246  aggacaaaattttgagtttctgccatttggagctggtagaagaggttgtcctg 194