Jatropha Genome Database

JcCB0430801.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0430801.10 + phase: 2 /pseudo/partial
         (588 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03205                                                           1057   0.0  

>KJC_c03205 
          Length = 1523

 Score = 1057 bits (533), Expect = 0.0
 Identities = 565/576 (98%), Gaps = 11/576 (1%)
 Strand = Plus / Plus

                                                                       
Query: 23  agagctggcgtgtttatgcaacaaaagaaaacaaatgaaggaggcaccaggtagaagaga 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 223 agagctggcgtgtttatgcaacaaaagaaaacaaatgaaggaggcaccagg-agaagaga 281

                                                                       
Query: 83  taacgatcttcatcgtttacttttcatgccaaatggtcttccagatggtgctgaattggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taacgatcttcatcgtttacttttcatgccaaatggtcttccagatggtgctgaattggc 341

                                                                       
Query: 143 ttactatgtcaaaggacaa----------gtggttacaagcagggaaatggcatagtttg 192
           |||||||||||||||||||          |||||||||||||||||||||||||||||||
Sbjct: 342 ttactatgtcaaaggacaacaactgttaggtggttacaagcagggaaatggcatagtttg 401

                                                                       
Query: 193 tagttgctgcgacagagagataagcccttctcaatttgaagcacatgctggaatggctgc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tagttgctgcgacagagagataagcccttctcaatttgaagcacatgctggaatggctgc 461

                                                                       
Query: 253 taggcgccaaccctaccgtcacatctatacttccaatggtttaactcttcatgatatagc 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taggcgccaaccctaccgtcacatctatacttccaatggtttaactcttcatgatatagc 521

                                                                       
Query: 313 aatttcattggcaaatgggcaaaatgttacctctggggtgagtgatgatatgtgtgcaaa 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aatttcattggcaaatgggcaaaatgttacctctggggtgagtgatgatatgtgtgcaaa 581

                                                                       
Query: 373 atgtggcgacggagggggtctaatattctgcgagagttgccctcgagcttttcatctcga 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 atgtggcgacggagggggtctaatattctgcgagagttgccctcgagcttttcatctcga 641

                                                                       
Query: 433 atgtttggatttgcagtgtgttccaaaaggtgtttggcagtgtccaagctgtattaagtc 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atgtttggatttgcagtgtgttccaaaaggtgtttggcagtgtccaagctgtattaagtc 701

                                                                       
Query: 493 tggacatggaggaaacttcacaagaccaataattattcggttgactcgggttgttaaaat 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tggacatggaggaaacttcacaagaccaataattattcggttgactcgggttgttaaaat 761

                                               
Query: 553 gccagagtatgaagttggtggttgtgctgtttgcag 588
           ||||||||||||||||||||||||||||||||||||
Sbjct: 762 gccagagtatgaagttggtggttgtgctgtttgcag 797