Jatropha Genome Database

JcCB0430531.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0430531.10 - phase: 0 /pseudo/partial
         (466 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10613                                                            394   e-110

>KJC_c10613 
          Length = 846

 Score =  394 bits (199), Expect = e-110
 Identities = 206/207 (99%), Gaps = 1/207 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgataaaatcagccaaaggcagtacgcaagatgataatttagatgatgaggaagagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgataaaatcagccaaaggcagtacgcaagatgataatttagatgatgaggaagagttt 562

                                                                       
Query: 61  gttcttaaaaaa-gaaagttcttcccctgtccataaaggggaattgagggtgaaagtgga 119
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcttaaaaaaagaaagttcttcccctgtccataaaggggaattgagggtgaaagtgga 502

                                                                       
Query: 120 tgggaagagcaccgatcagaaggctaacacgcctcggtcaaaacactctgccactgagca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggaagagcaccgatcagaaggctaacacgcctcggtcaaaacactctgccactgagca 442

                                      
Query: 180 acggaggaggagcaaaataaatgacag 206
           |||||||||||||||||||||||||||
Sbjct: 441 acggaggaggagcaaaataaatgacag 415



 Score =  315 bits (159), Expect = 5e-86
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                       
Query: 308 aggtaattgagtacattcaatttttacaggagaaagtacaaaaatatgaagggtcgtacc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aggtaattgagtacattcaatttttacaggagaaagtacaaaaatatgaagggtcgtacc 287

                                                                       
Query: 368 aaggatggaaccacgaacctgcaaaattggtgccatggagaaatggtaacaggcccactg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaggatggaaccacgaacctgcaaaattggtgccatggagaaatggtaacaggcccactg 227

                                                  
Query: 428 aaagttatgctgatcaatctcaaggcataaatggtggtg 466
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aaagttatgctgatcaatctcaaggcataaatggtggtg 188