Jatropha Genome Database

JcCB0429731.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0429731.20 - phase: 0 
         (543 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04900                                                            593   e-169

>KJC_c04900 
          Length = 425

 Score =  593 bits (299), Expect = e-169
 Identities = 306/307 (99%), Gaps = 1/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 237 aatggtgccagatgttaatcagatcattgtaaaagagaaaggtatcttcaccaatgtgat 296
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 425 aatggtgccagatgttaatcagatcattgtaaa-gagaaaggtatcttcaccaatgtgat 367

                                                                       
Query: 297 atcaccatcttcaaaggctaaactgagattgttgtttgaggtagctccattaggattcct 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atcaccatcttcaaaggctaaactgagattgttgtttgaggtagctccattaggattcct 307

                                                                       
Query: 357 gatagagaaagctggaggctatagtagtgatggccatatctctgtgttagacaaggagat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gatagagaaagctggaggctatagtagtgatggccatatctctgtgttagacaaggagat 247

                                                                       
Query: 417 caaaaatctcgatgacagaactcaagttgcttatggatcaaagaacgagattattcgatt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 caaaaatctcgatgacagaactcaagttgcttatggatcaaagaacgagattattcgatt 187

                                                                       
Query: 477 cgaagaaactctatacgggaaatcaagactcaaaactggaggagttcctgttggagctgc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cgaagaaactctatacgggaaatcaagactcaaaactggaggagttcctgttggagctgc 127

                  
Query: 537 tgcataa 543
           |||||||
Sbjct: 126 tgcataa 120