Jatropha Genome Database

JcCB0428661.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0428661.10 - phase: 0 /partial
         (1404 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04734                                                            121   5e-27
KJC_c05202                                                             52   4e-06

>KJC_c04734 
          Length = 603

 Score =  121 bits (61), Expect = 5e-27
 Identities = 208/257 (80%)
 Strand = Plus / Minus

                                                                        
Query: 1129 aagacagtccacagggacattaaaggagcaaatctgcttgttgattcatcaggcattgtt 1188
            |||||| | |||||||| || ||||| || ||| |||| |||||| |||| ||  |||||
Sbjct: 573  aagacaatacacagggatataaaaggggctaatttgctagttgatgcatctggtgttgtt 514

                                                                        
Query: 1189 aaactagcagattttgggttggcaaaacatcttactggaccagcatatgaattgtctttg 1248
            || || || || || ||| || | |||||||||||||||| ||||  |||| | ||||||
Sbjct: 513  aagcttgctgacttcgggatgtcgaaacatcttactggacaagcagctgaactttctttg 454

                                                                        
Query: 1249 aaaggcagtccacactggatggctccagaggtcatgaaagctaagatgcagaaagatgcc 1308
            || || |||||| ||||||||||||||||| | ||| |||||   |||||||||||||||
Sbjct: 453  aagggaagtccatactggatggctccagagcttatgcaagctgtaatgcagaaagatgcc 394

                                                                        
Query: 1309 aatcccgatcttgctttggctgttgatatatggagcttgggttgtaccatcattgagatg 1368
            |   | ||||||||  | ||||||||||| |||||  |||||||||| || ||||| |||
Sbjct: 393  agctctgatcttgcacttgctgttgatatttggagtctgggttgtactattattgaaatg 334

                             
Query: 1369 tttactggtaaacctcc 1385
            || ||||| ||||||||
Sbjct: 333  ttcactggaaaacctcc 317


>KJC_c05202 
          Length = 544

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 939  gcacccaaatatagtacagtattatggctgtgagatagttgatgatcacttttacatata 998
            |||||| |||||||| ||||||||||| | ||| |  ||||||||| | || || |||||
Sbjct: 379  gcaccctaatatagtgcagtattatggatctgaaacggttgatgataaattatatatata 320

                          
Query: 999  tttggagtatgttt 1012
             |||||||||||||
Sbjct: 319  cttggagtatgttt 306