Jatropha Genome Database

JcCB0428571.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0428571.10 + phase: 0 /partial
         (493 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12686                                                            605   e-173

>KJC_c12686 
          Length = 513

 Score =  605 bits (305), Expect = e-173
 Identities = 346/359 (96%), Gaps = 3/359 (0%)
 Strand = Plus / Plus

                                                                       
Query: 138 aaaatatgctattgttcaattccagactgccagagatgctgaattaattatatctttga- 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 2   aaaatatgctattgttcaattccagactgccagagatgctgaattaattatatctttgac 61

                                                                       
Query: 197 --ataaacgtcttcggtacggcacttcatatctcaaggctcggactttggctaaggatat 254
             ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 62  taataaacgtcttcggtacggcacttcatatctcaaggctcggcctttggataatgatat 121

                                                                       
Query: 255 tgtaccaaatcccagaacgtttttacacagcatggaccatataacactgcattttggatg 314
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgtaccaaagcccagaacgtttttacacagcatggaccatataacactgcattttggatg 181

                                                                       
Query: 315 tcggatatcaaaagaaaagttttctgttctatggacagggacaaatgtttcggtgaattt 374
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tcagatatcaaaagaaaagttttctgttctatggacagggacaaatgtttcggtgaattt 241

                                                                       
Query: 375 tggatttggattgagaaaattgcaattttttctatctcatgaacaaatggactacaagct 434
           |||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 242 tggatttggaatgagaaaattgcaattttttctatctcatggacaaatgggctacaagct 301

                                                                      
Query: 435 tgacctttcttatgagaatgtttggcagatcgagctacattgtccacgaggtcgatctg 493
           ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 302 tgaactttcttatgagaatgtttggcagatggagctacattgtccacgaggtcgatctg 360