Jatropha Genome Database
- JcCB0425521.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0425521.10 + phase: 0 /partial
(1254 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02116 1273 0.0
KJC_c04227 654 0.0
KJC_s18380 305 1e-82
>KJC_c02116
Length = 919
Score = 1273 bits (642), Expect = 0.0
Identities = 672/682 (98%), Gaps = 2/682 (0%)
Strand = Plus / Minus
Query: 1 atgcctctgacaaaaccaaaaccacaatcaccacctagtgatgaagatgagcattttatt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcctctg-caaaaccaaaaccacaatcaccacctagtgatgaagatgagcattttatt 623
Query: 61 ggagatgatgtgactagtgatggaaaaagaaagatgtctccttggcaaaggatgaaatgg 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 622 ggagatgatgtgactagtgatggaaaa-gaaagatgtctccttggcaaaggatgaaatgg 564
Query: 121 actgatagtatggttaggcttcttataatggcagtattttatattggtgatgaggctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actgatagtatggttaggcttcttataatggcagtattttatattggtgatgaggctgga 504
Query: 181 tctgaagtgaatgatcccacggggnnnnnnnnggctggtgggttatcacaaaagaaaggg 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 503 tctgaagtgaatgatcccacggggaaaaaaaaggctggtgggttatcacaaaagaaaggg 444
Query: 241 aaatggaaatctgtttcaagagcaatgatggaaaaaggattttatgtatctcctcaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaatggaaatctgtttcaagagcaatgatggaaaaaggattttatgtatctcctcaacaa 384
Query: 301 tgtgaggataaatttaatgacttgaataaaaggtataagagggtgaatgatatacttggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgaggataaatttaatgacttgaataaaaggtataagagggtgaatgatatacttggg 324
Query: 361 aaaggaactgcttgtaaggttgtggagaatcaaagtttgcttgaaacaatggatttgtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaggaactgcttgtaaggttgtggagaatcaaagtttgcttgaaacaatggatttgtca 264
Query: 421 ccaaaaatgaaagaagaagtgaaaaaattgttgaattctaaacacttgttttttagagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaaaaatgaaagaagaagtgaaaaaattgttgaattctaaacacttgttttttagagaa 204
Query: 481 atgtgtgcttatcataatagttgcggtcatggatcgagtggagttgcttctggtactact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 atgtgtgcttatcataatagttgcggtcatggatcgagtggagttgcttctggtactact 144
Query: 541 aatcactcaccagaagttgctactgaccaatctcatgctcaacacccacacgcatctcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aatcactcaccagaagttgctactgaccaatctcatgctcaacacccacacgcatctcat 84
Query: 601 gttcagcagcaaaggtgttctcattcatctgaaaatgcccaactcgcaaccaattcaagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gttcagcagcaaaggtgttctcattcatctgaaaatgcccaactcgcaaccaattcaagg 24
Query: 661 agtgagactgaggggtcaaaaa 682
||||||||||||||||||||||
Sbjct: 23 agtgagactgaggggtcaaaaa 2
>KJC_c04227
Length = 727
Score = 654 bits (330), Expect = 0.0
Identities = 333/334 (99%)
Strand = Plus / Minus
Query: 776 caattgaaggcaattcaagaggtcaaaatgggcatggacatggacatgaagatgaagatg 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caattgaaggcaattcaagaggtcaaaatgggcatggacatggacatgaagatgaagatg 561
Query: 836 atcatgaagagaaaccttcgcgaaagaggcaaagaactggaatatttgctttatcatcat 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atcatgaagagaaaccttcgcgaaagaggcaaagaactggaatatttgctttatcatcat 501
Query: 896 ctttgatgcagcaattgagtagtgaattagttagtgttattcaagacggagcaaaaagtc 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttgatgcagcaattgagtagtgaattagttagtgttattcaagacggagcaaaaagtc 441
Query: 956 catgggagaagaagcattggatgaaagtaagattaatggaattagaagagcagcaagtga 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgggagaagaagcattggatgaaagtaagattaatggaattagaagagcagcaagtga 381
Query: 1016 gctatcaacgccaagcacttgaacttgaaaagcaaaggctaaagtgggtgaaatttagta 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctatcaacgccaagcacttgaacttgaaaagcaaaggctaaagtgggtgaaatttagta 321
Query: 1076 gcaagaaagaaagggaaatggaaagagctaaatt 1109
|||||||||||||| |||||||||||||||||||
Sbjct: 320 gcaagaaagaaaggcaaatggaaagagctaaatt 287
>KJC_s18380
Length = 348
Score = 305 bits (154), Expect = 1e-82
Identities = 190/197 (96%), Gaps = 5/197 (2%)
Strand = Plus / Plus
Query: 1 atgcctctgacaaaaccaaaaccacaatcaccacctagtgatgaagatgagcattttatt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 155 atgcctctg-caaaaccaaaaccacaatcaccacctagtgatgaagatgagcatttttat 213
Query: 61 ggagatgatgtgactagtgat--ggaaaaagaaagatgtctccttggcaaaggatgaaat 118
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 214 ggagatgatgtgactagtgatagggaaaaagaa-gatgtctccttggcaaaggatgaaat 272
Query: 119 ggactgatagtatggttaggcttcttataatggcagtattttatattggtgatgaggctg 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 273 ggactgatagtatggttaggcttcttataatggcagta-tttatattggtgatgaggctg 331
Query: 179 gatctgaagtgaatgat 195
|||||||||||||||||
Sbjct: 332 gatctgaagtgaatgat 348