Jatropha Genome Database
- JcCB0402071.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0402071.10 - phase: 0 /partial
(965 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01163 890 0.0
KJC_s19292 157 6e-38
>KJC_c01163
Length = 1184
Score = 890 bits (449), Expect = 0.0
Identities = 782/889 (87%), Gaps = 3/889 (0%)
Strand = Plus / Minus
Query: 76 tcacttcccaggttcaagatgccagtgaactcaatccctaaagaagcagcttatcaaatc 135
|||||||| |||||||||||||| | ||||| ||||| || |||||||| ||||| |||
Sbjct: 1072 tcacttcctaggttcaagatgccggaaaactcgatcccgaaggaagcagcgtatcagatc 1013
Query: 136 atcaatgatgagctaatgttggatgggaatcctagacttaacctcgcttcctttgtgact 195
||||| |||||||||||||||||||||||||| || |||||||| || |||||||| |||
Sbjct: 1012 atcaacgatgagctaatgttggatgggaatccaaggcttaacctggcctcctttgtaact 953
Query: 196 acatggatggaacctgaatgtgataagcttattatggcttctgtcaacaagaactacgtt 255
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 952 acatggatggaacctgaatgtgataagcttattatggctggtatcaacaagaactacgtt 893
Query: 256 gacatggatgagtatcctgtcaccactgagttacagaatcgatgtgtgaacatgatagca 315
|||||||||||||| || |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 892 gacatggatgagtacccggtcaccactgagttgcagaaccgatgtgttaacatgatagca 833
Query: 316 catctttttaatgcaccacttggagaagcagaggctgcagttggagttggaacagttgga 375
||||| ||||| || ||||||||||| ||||| |||| |||||||| ||||| |||||
Sbjct: 832 catctgtttaacgccccacttggagattcagagactgcggttggagtgggaactgttggg 773
Query: 376 tcttcagaggcaataatgttggctggtttagcatttaagagaaagtggcaaaacaggaga 435
|||||||||||||||||||| ||||| |||||||| ||||| || ||||| |||| ||||
Sbjct: 772 tcttcagaggcaataatgttagctggattagcattcaagaggaaatggcagaacaagaga 713
Query: 436 aaagctcaaggaaaacccattgataaccctaatattgtcactggtgccaatgttcaggtt 495
|||||| ||||||| ||| | ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 712 aaagctgaaggaaagcccttcgataagcctaacattgtcactggtgctaatgttcaggtt 653
Query: 496 tgctgggagaaatttgcaaggtactttgaggtggaattgaaagaagtaaagc-taaagcc 554
|| |||||||||||||| ||||| ||||| || || ||||| ||||| |||| || ||
Sbjct: 652 tgttgggagaaatttgctaggtattttgaagtagagttgaaggaagtgaagcttagagat 593
Query: 555 ggattattatgtactagaccctgaaaaggcagtggagatggtggatgagaacacaatctg 614
|| |||||||| | || || | || |||||||| | || |||||||||||||| ||
Sbjct: 592 gg-gtattatgtgatggatccaaagaaagcagtggatttagttgatgagaacacaatttg 534
Query: 615 tgtagctgctattcttggctccaccctcaatggagaatttgaagatgtaaagcaattgaa 674
||| |||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||
Sbjct: 533 tgttgctgctatccttggctccactcttaatggggaatttgaagatgtaaagctcttgaa 474
Query: 675 tgatcttttgatggagaagaataaggaaacaggatgggaaaccccgattcatgtggatgc 734
|||||| |||| |||||||| ||| |||| |||||||| | ||| ||||||||||||||
Sbjct: 473 tgatctcttgacagagaagaacaagcaaactggatgggata-cccaattcatgtggatgc 415
Query: 735 agcaagtggtgggtttattgcaccatttttgtatccagaacttgaatgggattttagatt 794
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 414 agcaagtggtggatttattgcaccatttttgtatccagaacttgagtgggattttagact 355
Query: 795 accattagttaagagtattaatgttagtggtcacaaatatgggcttgtatatgctggtat 854
|||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 354 accattagttaagagtatcaatgttagtggtcacaagtatggacttgtgtatgctggtgt 295
Query: 855 tggttgggtcatttggagaagcaaagaggacttgcctgaagagctcattttccatattaa 914
||||||||| |||||||| ||||||||||||||||||||||| || || || ||||| ||
Sbjct: 294 tggttgggtaatttggaggagcaaagaggacttgcctgaagaacttatctttcatatcaa 235
Query: 915 ttaccttggagctgatcaacccaccttcaccctcaatttctccaaaggt 963
||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 234 ttaccttggagctgatcaacctacctttaccctcaatttctccaaaggt 186
>KJC_s19292
Length = 320
Score = 157 bits (79), Expect = 6e-38
Identities = 145/167 (86%)
Strand = Plus / Plus
Query: 382 gaggcaataatgttggctggtttagcatttaagagaaagtggcaaaacaggagaaaagct 441
|||||||||||||| ||||| |||||||| ||||| || ||||| |||| ||||||||||
Sbjct: 58 gaggcaataatgttagctggattagcattcaagaggaaatggcagaacaagagaaaagct 117
Query: 442 caaggaaaacccattgataaccctaatattgtcactggtgccaatgttcaggtttgctgg 501
||||||| ||| | ||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct: 118 gaaggaaagcccttcgataagcctaacattgtcactggtgctaatgttcaggtttgttgg 177
Query: 502 gagaaatttgcaaggtactttgaggtggaattgaaagaagtaaagct 548
||||||||||| ||||| ||||| || || ||||| ||||| |||||
Sbjct: 178 gagaaatttgctaggtattttgaagtagagttgaaggaagtgaagct 224
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 344 cagaggctgcagttggagttggaacagttggatcttcagaggcaata 390
||||| |||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 58 cagagactgcggttggagtgggaactgttgggtcttcagaggcaata 12