Jatropha Genome Database

JcCB0401531.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0401531.10 - phase: 0 /pseudo/partial
         (562 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03044                                                            702   0.0  

>KJC_c03044 
          Length = 716

 Score =  702 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Plus

                                                                       
Query: 100 aagaaggtggaacacttgactgcacttgaaggagctcaagagagacttcagctgtttaaa 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aagaaggtggaacacttgactgcacttgaaggagctcaagagagacttcagctgtttaaa 60

                                                                       
Query: 160 gcaaacctattggaagaaggttcctttgatgctgcaattgaagggtgtgaaggtgttttc 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcaaacctattggaagaaggttcctttgatgctgcaattgaagggtgtgaaggtgttttc 120

                                                                       
Query: 220 catactgcatctccctttttccatgacgttacagatccacagacagaattaattgatcct 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catactgcatctccctttttccatgacgttacagatccacagacagaattaattgatcct 180

                                                                       
Query: 280 gcagtgaagggaacactaaatgttcttaattcttgtgcaagaactccttcagtcaaacga 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcagtgaagggaacactaaatgttcttaattcttgtgcaagaactccttcagtcaaacga 240

                                                                       
Query: 340 gttgtcttgacatcttctatcgctgcagttaattataatggaaagcctcgaactccagag 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttgtcttgacatcttctatcgctgcagttaattataatggaaagcctcgaactccagag 300

                                                                 
Query: 400 gtagttgtggatgaaacttggttttctgatccagaattttgcaaggaaaataag 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtagttgtggatgaaacttggttttctgatccagaattttgcaaggaaaataag 354