Jatropha Genome Database
- JcCB0399791.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0399791.10 + phase: 1 /partial
(1484 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c03298 1195 0.0
KJC_c05927 946 0.0
KJC_c00873 64 1e-09
KJC_c07557 58 6e-08
KJC_c00643 54 1e-06
>KJC_c03298
Length = 890
Score = 1195 bits (603), Expect = 0.0
Identities = 603/603 (100%)
Strand = Plus / Plus
Query: 824 gaaagataacgacgagtttggtagagatgagttcagttttggaaacagaccggtgacaaa 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagataacgacgagtttggtagagatgagttcagttttggaaacagaccggtgacaaa 60
Query: 884 tggggtggaccgtgagggtccagtgctttccaagcttggttcaagctccacagcagagct 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggggtggaccgtgagggtccagtgctttccaagcttggttcaagctccacagcagagct 120
Query: 944 ccaccccaagactggtgttgatggtgaacccaagcctactgccatgccacctgctagtgt 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaccccaagactggtgttgatggtgaacccaagcctactgccatgccacctgctagtgt 180
Query: 1004 tatgacaagactcattcttattatggtttggagaaaacttataaggaatcccaatactta 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgacaagactcattcttattatggtttggagaaaacttataaggaatcccaatactta 240
Query: 1064 ttccagtctcattggccttacttggtctcttgtttctttcaaatggaatatagtgatgcc 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttccagtctcattggccttacttggtctcttgtttctttcaaatggaatatagtgatgcc 300
Query: 1124 tgctattattgctcgttcaatatctatcctatccgatgcaggtcttggaatggctatgtt 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgctattattgctcgttcaatatctatcctatccgatgcaggtcttggaatggctatgtt 360
Query: 1184 tagtcttggattattcatggcattacagccaagaatcattgcttgtggaaactcaatcgc 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tagtcttggattattcatggcattacagccaagaatcattgcttgtggaaactcaatcgc 420
Query: 1244 gtcctttgcaatggctgttagattccttactggtcctgcagtaatggctgctgcttcaat 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcctttgcaatggctgttagattccttactggtcctgcagtaatggctgctgcttcaat 480
Query: 1304 tgcggtaggcctacgcggagttctgttgcatgtagcaatagtgcaggcagctcttccaca 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgcggtaggcctacgcggagttctgttgcatgtagcaatagtgcaggcagctcttccaca 540
Query: 1364 aggaattgttccctttgtctttgcaaaggaatataatgttcatccagatatattgagcac 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggaattgttccctttgtctttgcaaaggaatataatgttcatccagatatattgagcac 600
Query: 1424 tgg 1426
|||
Sbjct: 601 tgg 603
Score = 117 bits (59), Expect = 8e-26
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1426 gctcttcctataacactggtttactacatcctgctcggactttgaagattaagcagcca 1484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctcttcctataacactggtttactacatcctgctcggactttgaagattaagcagcca 684
>KJC_c05927
Length = 525
Score = 946 bits (477), Expect = 0.0
Identities = 524/532 (98%), Gaps = 7/532 (1%)
Strand = Plus / Minus
Query: 159 ctctttctatttgaatatagaggagctagaatcctgattggtgaacagtttcctgatact 218
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 525 ctctttctatttgaatatagag-agct-gaatcctgattggtgaacagtttcctgatact 468
Query: 219 gctggttctataatatcttttagagttgattctgatattatttctttagacggaagagag 278
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 467 gctggttctataatatcttttaga-ttgattctgatata--ttctttagacggaagagag 411
Query: 279 ccattgcaaactgaagcagaacttggtgaagatgggaagcttcacgttacagttaggaaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccattgcaaactgaagcagaacttggtgaagatgggaagcttcacgttacagttaggaaa 351
Query: 339 tcaactagctcaagatcagaaattttctctcgtagatcccatggtccaaattctggcctt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcaactagctcaagatcagaaattttctctcgtagatcccatggtccaaattctggcctt 291
Query: 399 tcattaactcctagaccatctaatctaactaatgcagagatatactctcttcaatcttca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tcattaactcctagaccatctaatctaactaatgcagagatatactctcttcaatcttca 231
Query: 459 agaaatccaaccccaagaggctcaagttttaaccatactgatttttattcaatggttaat 518
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 agaa-tccaaccccaagaggctcaagttttaaccatactgatttttattcaatggttaat 172
Query: 519 ggcaagaatgcaagtaacgtgagcccaaggcaatccaacttcggaaacttgccgtttgat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ggcaagaatgcaagtaacgtgagcccaaggcaatccaacttcggaaacttgccgtttgat 112
Query: 579 gaagaaaatggaggaattggattgtttggtaacgtttcaagagcaaatggtggaagtgct 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gaagaaaatggaggaattggattgtttggtaacgtttcaagagcaaatggtggaagtgct 52
Query: 639 tatccagctccacctaatgcagggattttctctcctggggttaaaaagaaag 690
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 51 tatccagctccacctaatgcaggga-tttctctcctggggttaaaaagaaag 1
>KJC_c00873
Length = 801
Score = 63.9 bits (32), Expect = 1e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 1026 atggtttggagaaaacttataaggaatcccaatacttattccagtctcattggcct 1081
||||||||| ||||||| || ||||||||||| || || |||||||||||||||||
Sbjct: 312 atggtttggcgaaaactgattaggaatcccaacacatactccagtctcattggcct 367
>KJC_c07557
Length = 553
Score = 58.0 bits (29), Expect = 6e-08
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 27 ttttctctttccacgcttccaaacactcttgttatgggcatccctttgttaaagggcatg 86
||||| ||||| || |||||||| |||||||||||||| || |||||| | || || |||
Sbjct: 392 ttttcactttctactcttccaaatactcttgttatgggtattcctttgcttaaaggaatg 451
Query: 87 tatggagatttttcgggaagtcttatggttcaaatagttgt 127
||||| || ||||| || ||| | ||||| ||||| |||||
Sbjct: 452 tatggtgaattttctggtagtttgatggtgcaaattgttgt 492
>KJC_c00643
Length = 1334
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 36 tccacgcttccaaacactcttgttatgggcatccctttgttaa 78
||||| ||||||||||| |||||||||||||| ||| ||||||
Sbjct: 843 tccactcttccaaacacgcttgttatgggcattcctctgttaa 801