Jatropha Genome Database

JcCB0398871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0398871.10 + phase: 2 /partial
         (160 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01737                                                            242   2e-64
KJC_s19893                                                            240   8e-64

>KJC_c01737 
          Length = 805

 Score =  242 bits (122), Expect = 2e-64
 Identities = 129/130 (99%), Gaps = 1/130 (0%)
 Strand = Plus / Plus

                                                                       
Query: 32  gtttgcagtgctgttggtgtgttgcctttgtctctccaatacggtttctcaattgttgag 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtttgcagtgctgttggtgtgttgcctttgtctctccaatacggtttctcaattgttgag 476

                                                                       
Query: 92  -aagttcttaaaaggagcatcaagcattgatcaacacttctcttcagcgccatttgagaa 150
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 taagttcttaaaaggagcatcaagcattgatcaacacttctcttcagcgccatttgagaa 536

                     
Query: 151 aaatgttcct 160
           ||||||||||
Sbjct: 537 aaatgttcct 546


>KJC_s19893 
          Length = 325

 Score =  240 bits (121), Expect = 8e-64
 Identities = 128/129 (99%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                       
Query: 32  gtttgcagtgctgttggtgtgttgcctttgtctctccaatacggtttctcaattgttgag 91
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 116 gtttgcagtgctgttggtgtgttgcctttgtctctccaatacggtt-ctcaattgttgag 174

                                                                       
Query: 92  aagttcttaaaaggagcatcaagcattgatcaacacttctcttcagcgccatttgagaaa 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aagttcttaaaaggagcatcaagcattgatcaacacttctcttcagcgccatttgagaaa 234

                    
Query: 152 aatgttcct 160
           |||||||||
Sbjct: 235 aatgttcct 243