Jatropha Genome Database

JcCB0389891.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0389891.20 - phase: 0 
         (300 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04348                                                            343   1e-94
KJC_c11183                                                            172   3e-43

>KJC_c04348 
          Length = 571

 Score =  343 bits (173), Expect = 1e-94
 Identities = 196/200 (98%), Gaps = 4/200 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  gttctagagaatttccgaggaaatgttcagacacgactgagaaaactcaatgaaggggtg 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gttctagagaatttccgaggaaatgttcagacacgactgagaaaactcaatgaaggggtg 431

                                                                       
Query: 88  gttcaagcaacactactggcattagctggacttaaacgattaaatatgacagaaaatgtg 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gttcaagcaacactactggcattagctggacttaaacgattaaatatgacagaaaatgtg 491

                                                                       
Query: 148 acttcaattctttcaattgatgacatgctaccagcagttgctc-aagggg--caa-tagg 203
           ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| ||||
Sbjct: 492 acttcaattctttcaattgatgacatgctaccagcagttgctcgaaggggtacaagtagg 551

                               
Query: 204 gattgcctgtcgaagcaatg 223
           ||||||||||||||||||||
Sbjct: 552 gattgcctgtcgaagcaatg 571


>KJC_c11183 
          Length = 746

 Score =  172 bits (87), Expect = 3e-43
 Identities = 87/87 (100%)
 Strand = Plus / Minus

                                                                       
Query: 149 cttcaattctttcaattgatgacatgctaccagcagttgctcaaggggcaatagggattg 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cttcaattctttcaattgatgacatgctaccagcagttgctcaaggggcaatagggattg 687

                                      
Query: 209 cctgtcgaagcaatgacgataaaatgg 235
           |||||||||||||||||||||||||||
Sbjct: 686 cctgtcgaagcaatgacgataaaatgg 660