Jatropha Genome Database
- JcCB0389841.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0389841.10 + phase: 2 /partial
(973 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01296 1891 0.0
KJC_s19561 335 1e-91
KJC_c03268 92 3e-18
KJC_c06470 52 3e-06
>KJC_c01296
Length = 1319
Score = 1891 bits (954), Expect = 0.0
Identities = 954/954 (100%)
Strand = Plus / Plus
Query: 20 ctctttcctcatttctctgtctttctctccctgcggagttacccaaacgtggaaatgagg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctttcctcatttctctgtctttctctccctgcggagttacccaaacgtggaaatgagg 60
Query: 80 agctcactattcagatccgtcaaaaccctaacaaactctacctcttcttctcacctcctc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agctcactattcagatccgtcaaaaccctaacaaactctacctcttcttctcacctcctc 120
Query: 140 cgtcgtggctatggctctgaggccgtccccgatcggaaggtcgctgtccttggtgccgcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgtcgtggctatggctctgaggccgtccccgatcggaaggtcgctgtccttggtgccgcc 180
Query: 200 ggtggaattggtcagccattggctttgctcatgaagcttaatcctctcgtatctaacctt 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtggaattggtcagccattggctttgctcatgaagcttaatcctctcgtatctaacctt 240
Query: 260 gctctctacgatattgctaacacccctggagtcgccgccgatgttagccacatcaatacc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gctctctacgatattgctaacacccctggagtcgccgccgatgttagccacatcaatacc 300
Query: 320 agatctgaggttaaagggtatgtaggagaagatcaattggggcaagccttggaaggatct 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agatctgaggttaaagggtatgtaggagaagatcaattggggcaagccttggaaggatct 360
Query: 380 gatgttgtgatcattccagctggtgtgccaaggaagcctggaatgacccgtgatgatctg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatgttgtgatcattccagctggtgtgccaaggaagcctggaatgacccgtgatgatctg 420
Query: 440 ttcaacatcaatgctggaattgttaagggactctgtcaagcaatttccaagtactgtcct 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcaacatcaatgctggaattgttaagggactctgtcaagcaatttccaagtactgtcct 480
Query: 500 aatgcacttgttaatatgattagcaaccctgtgaattcgactgtgcccattgcagctgaa 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatgcacttgttaatatgattagcaaccctgtgaattcgactgtgcccattgcagctgaa 540
Query: 560 gttttcaaaaaggcaggaacctatgatgagaaaagattgtttggtgtaacaacccttgac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttttcaaaaaggcaggaacctatgatgagaaaagattgtttggtgtaacaacccttgac 600
Query: 620 gttgttagggccaagactttctatgctggaaaggccaaggttccagttgcagaggttaat 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttgttagggccaagactttctatgctggaaaggccaaggttccagttgcagaggttaat 660
Query: 680 gtaccagttgttggtggccatgccggcatcaccattcttccactattttcacaggccaca 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtaccagttgttggtggccatgccggcatcaccattcttccactattttcacaggccaca 720
Query: 740 ccaaaagccaatttgtcaagtgaagatattgaagctcttacaaagagaactcaagatgga 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaaaagccaatttgtcaagtgaagatattgaagctcttacaaagagaactcaagatgga 780
Query: 800 gggacggaagttgtggaagcaaaggctggaaagggctctgcaactctgtcaatggcctat 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gggacggaagttgtggaagcaaaggctggaaagggctctgcaactctgtcaatggcctat 840
Query: 860 gctggagccatcttcgctgatgcttgcttgaaaggactgaatggagttccagatgttgtg 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gctggagccatcttcgctgatgcttgcttgaaaggactgaatggagttccagatgttgtg 900
Query: 920 gaatgtacatttgtgcaatcaagtgttactgaacttccattctttgcttcgaag 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaatgtacatttgtgcaatcaagtgttactgaacttccattctttgcttcgaag 954
>KJC_s19561
Length = 410
Score = 335 bits (169), Expect = 1e-91
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 503 gcacttgttaatatgattagcaaccctgtgaattcgactgtgcccattgcagctgaagtt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcacttgttaatatgattagcaaccctgtgaattcgactgtgcccattgcagctgaagtt 122
Query: 563 ttcaaaaaggcaggaacctatgatgagaaaagattgtttggtgtaacaacccttgacgtt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcaaaaaggcaggaacctatgatgagaaaagattgtttggtgtaacaacccttgacgtt 62
Query: 623 gttagggccaagactttctatgctggaaaggccaaggttccagttgcag 671
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttagggccaagactttctatgctggaaaggccaaggttccagttgcag 13
Score = 161 bits (81), Expect = 4e-39
Identities = 108/114 (94%), Gaps = 4/114 (3%)
Strand = Plus / Minus
Query: 390 tcattccagctggtgtgccaaggaagcctggaatgacccgtgatgatctgttcaacatca 449
|||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||||
Sbjct: 410 tcattccagctggtgtgc--aggaagc-tggaatgacc-gtgatgatcngttcaacatca 355
Query: 450 atgctggaattgttaagggactctgtcaagcaatttccaagtactgtcctaatg 503
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atgctggaattnttaagggactctgtcaagcaatttccaagtactgtcctaatg 301
>KJC_c03268
Length = 1235
Score = 91.7 bits (46), Expect = 3e-18
Identities = 163/202 (80%)
Strand = Plus / Plus
Query: 384 ttgtgatcattccagctggtgtgccaaggaagcctggaatgacccgtgatgatctgttca 443
|||| ||||| || ||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct: 381 ttgtaatcatacctgctggtgtgccaaggaagcctggaatgactagggatgatcttttca 440
Query: 444 acatcaatgctggaattgttaagggactctgtcaagcaatttccaagtactgtcctaatg 503
| || |||||||| ||||| | | |||||| ||| |||| |||| | |||||| || |
Sbjct: 441 atattaatgctgggattgtcaggactctctgtgaaggaattgccaattgctgtcccaaag 500
Query: 504 cacttgttaatatgattagcaaccctgtgaattcgactgtgcccattgcagctgaagttt 563
|| | || ||| |||| || || ||||| ||||| || || || ||||||||||| ||||
Sbjct: 501 cagtggtgaatttgatcagtaatcctgttaattccacagtaccgattgcagctgaggttt 560
Query: 564 tcaaaaaggcaggaacctatga 585
|||| || || ||||| |||||
Sbjct: 561 tcaagaaagctggaacttatga 582
>KJC_c06470
Length = 935
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 412 gaagcctggaatgacccgtgatgatctgttcaacatcaatgc 453
||||||||| ||||||||||| || || ||||||||||||||
Sbjct: 583 gaagcctggtatgacccgtgacgacctcttcaacatcaatgc 624