Jatropha Genome Database

JcCB0388281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0388281.10 - phase: 0 /partial
         (345 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01901                                                            630   0.0  
KJC_c04627                                                             72   1e-12

>KJC_c01901 
          Length = 1303

 Score =  630 bits (318), Expect = 0.0
 Identities = 332/339 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaagtggaaccacagaatcgcttccaacccctaaaggtgattttggaattgaacaagac 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ggaagtggaaccacagaatcgcttccaacccctaaaggtgattttggaattgaacaagac 720

                                                                       
Query: 67  cgactttcgacactcacaagggatcataagcttgatgaactagagcgaattnnnnnnnta 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 719 cgactttcgacactcacaagggatcataagcttgatgaactagagcgaattgggggggta 660

                                                                       
Query: 127 aaagggctttctgatctcttaaaaacaaatacagagaagggaatccatggagatgatgct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaagggctttctgatctcttaaaaacaaatacagagaagggaatccatggagatgatgct 600

                                                                       
Query: 187 gatttactgaagcgcaagaatgcttttggatcgaacacatatcctcagaaaaaaggaagg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gatttactgaagcgcaagaatgcttttggatcgaacacatatcctcagaaaaaaggaagg 540

                                                                       
Query: 247 agtttctggatgttcctttgggaagcatggcaagatcttacattgatcatactgatggtg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agtttctggatgttcctttgggaagcatggcaagatcttacattgatcatactgatggtg 480

                                                  
Query: 307 gctgctgtggcttctttggcactgggtataaagacagag 345
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gctgctgtggcttctttggcactgggtataaagacagag 441


>KJC_c04627 
          Length = 708

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                       
Query: 223 acatatcctcagaaaaaaggaaggagtttctggatgttcctttgggaagcatggcaagat 282
           |||||||||| |||||||||  ||||||||| || ||||||||||||||| |||||||||
Sbjct: 319 acatatcctcggaaaaaagggcggagtttcttgaggttcctttgggaagcttggcaagat 260