Jatropha Genome Database

JcCB0387971.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0387971.20 + phase: 0 /partial
         (355 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05692                                                            444   e-125
KJC_c09711                                                            192   4e-49

>KJC_c05692 
          Length = 826

 Score =  444 bits (224), Expect = e-125
 Identities = 224/224 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacttggagatgcttatgggcttctaatgcataggaatggtcagtgggagtggactctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gcacttggagatgcttatgggcttctaatgcataggaatggtcagtgggagtggactctt 165

                                                                       
Query: 61  gctcctggagtttctccttcaccgaggtatcagcatgctgcggtttttgttggtgcacga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gctcctggagtttctccttcaccgaggtatcagcatgctgcggtttttgttggtgcacga 105

                                                                       
Query: 121 ttgcatgtttcaggaggcgctttgaaggggggacgtgcagtagaaagtgaagcagctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ttgcatgtttcaggaggcgctttgaaggggggacgtgcagtagaaagtgaagcagctgtt 45

                                                       
Query: 181 gcagtgctggacactgccgctggtgtttggttggataaaaatgg 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  gcagtgctggacactgccgctggtgtttggttggataaaaatgg 1


>KJC_c09711 
          Length = 592

 Score =  192 bits (97), Expect = 4e-49
 Identities = 97/97 (100%)
 Strand = Plus / Minus

                                                                       
Query: 259 actgaacatgacccttctttggagctaatgcgtcgttgtcgccacgcatctgcttctgtt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 actgaacatgacccttctttggagctaatgcgtcgttgtcgccacgcatctgcttctgtt 533

                                                
Query: 319 ggtgttcgaatatatgtttatggtggtctaagaggag 355
           |||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggtgttcgaatatatgtttatggtggtctaagaggag 496