Jatropha Genome Database

JcCB0384191.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0384191.10 + phase: 0 /partial
         (540 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02492                                                            571   e-163

>KJC_c02492 
          Length = 956

 Score =  571 bits (288), Expect = e-163
 Identities = 302/309 (97%)
 Strand = Plus / Plus

                                                                       
Query: 232 tcgagcgtcattatgggccagactggactgtatcaaaaggatgctgagaaatatgcaaac 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcgagcgtcattatgggccagactggactgtatcaaaaggatgctgagaaatatgcaaac 60

                                                                       
Query: 292 atagaatacatgaggtgtagtccagagaatggtttctttcccgatttgtctaaggtctct 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atagaatacatgaggtgtagtccagagaatggtttctttcccgatttgtctaaggtctct 120

                                                                       
Query: 352 cgaacagatatcannnnnnnctgttcaccaaacaatcctactggttctgttgcaacaaga 411
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgaacagatatcatttttttctgttcaccaaacaatcctactggttctgttgcaacaaga 180

                                                                       
Query: 412 gagcaactggtgcaattagtacagtttgccaaggacaatggttcaatcattgtctatgat 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagcaactggtgcaattagtacagtttgccaaggacaatggttcaatcattgtctatgat 240

                                                                       
Query: 472 tcagcatatgccatgtatatatctgatgataagccacggtctatatttgaaattcctgga 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcagcatatgccatgtatatatctgatgataagccacggtctatatttgaaattcctgga 300

                    
Query: 532 gccaaggag 540
           |||||||||
Sbjct: 301 gccaaggag 309