Jatropha Genome Database

JcCB0374601.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0374601.10 - phase: 1 /pseudo/partial
         (830 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00957                                                            850   0.0  

>KJC_c00957 
          Length = 1446

 Score =  850 bits (429), Expect = 0.0
 Identities = 450/458 (98%), Gaps = 1/458 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   gagcaagtaattgatgggcttgataaagctgtggcgtcaatgaagaagggtgaggtggct 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  gagcaagtaattgatgggcttgataaagctgtggcgtcaatgaagaagggtgaggtggct 1049

                                                                        
Query: 108  ctagtgactattgcaccagaatatgcatttggatcatccgagtcaaagcaggagttggct 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 ctagtgactattgcaccagaatatgcatttggatcatccgagtcaaagcaggagttggct 1109

                                                                        
Query: 168  gttgttcctcctaactcaactgtatactatgaggttgagctggtctcctttgtcaaagag 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 gttgttcctcctaactcaactgtatactatgaggttgagctggtctcctttgtcaaagag 1169

                                                                        
Query: 228  aaggagtcatgggacatgaacacccaggaaaaaatcgaagctgctggtaagaagaaggaa 287
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1170 aaggagtcatgggacatgaacacccaggaaaaaatcgaagctgctggtaagaagaagg-a 1228

                                                                        
Query: 288  gaaggcaatgttttattcaaggctggaaaatatgtaagggcatccaaaagatatgaaaag 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 gaaggcaatgttttattcaaggctggaaaatatgtaagggcatccaaaagatatgaaaag 1288

                                                                        
Query: 348  gctgttaaatatatagagtatgattcctcctttagcgaggaggnnnnnnngcaggccaag 407
            |||||||||||||||||||||||||||||||||||||||||||       ||||||||||
Sbjct: 1289 gctgttaaatatatagagtatgattcctcctttagcgaggaggaaaaaaagcaggccaag 1348

                                                                        
Query: 408  gcgttaaaggttgcttgtaacctaaataatgctgcgtgcaagctaaaactgaaggactat 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 gcgttaaaggttgcttgtaacctaaataatgctgcgtgcaagctaaaactgaaggactat 1408

                                                  
Query: 468  aaagaggcagaaaaattgtgcaccaaggtgctagagtt 505
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 aaagaggcagaaaaattgtgcaccaaggtgctagagtt 1446