Jatropha Genome Database
- JcCB0373961.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0373961.10 + phase: 1 /pseudo/partial
(393 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02779 555 e-158
KJC_c12379 406 e-113
>KJC_c02779
Length = 856
Score = 555 bits (280), Expect = e-158
Identities = 287/288 (99%), Gaps = 1/288 (0%)
Strand = Plus / Plus
Query: 1 agtttgaacgattaaatcctcttcattatgtaccggtgttggttgatggtgatgtggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 agtttgaacgattaaatcctcttcattatgtaccggtgttggttgatggtgatgtggtgg 227
Query: 61 tctcagactcttttgcaatattgctgtatttggaagaaaagtatcctcaaaaggcattgt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 228 tctcagactcttttgcaatattgctgtatttggaagaaa-gtatcctcaaaaggcattgt 286
Query: 121 tgccagatgatattcagcaaagagctctgaatctgcaggctgccagtatcatcacctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgccagatgatattcagcaaagagctctgaatctgcaggctgccagtatcatcacctcta 346
Query: 181 gcatgcaacctcttcatatggtgtcattgcagaaatatatggaagaaaaaatcggtcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcatgcaacctcttcatatggtgtcattgcagaaatatatggaagaaaaaatcggtcctg 406
Query: 241 gagagccattattgtggagtcaatctattatcgagaagggtctgcttg 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gagagccattattgtggagtcaatctattatcgagaagggtctgcttg 454
>KJC_c12379
Length = 819
Score = 406 bits (205), Expect = e-113
Identities = 212/213 (99%), Gaps = 1/213 (0%)
Strand = Plus / Plus
Query: 1 agtttgaacgattaaa-tcctcttcattatgtaccggtgttggttgatggtgatgtggtg 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 agtttgaacgattaaaatcctcttcattatgtaccggtgttggttgatggtgatgtggtg 284
Query: 60 gtctcagactcttttgcaatattgctgtatttggaagaaaagtatcctcaaaaggcattg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtctcagactcttttgcaatattgctgtatttggaagaaaagtatcctcaaaaggcattg 344
Query: 120 ttgccagatgatattcagcaaagagctctgaatctgcaggctgccagtatcatcacctct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttgccagatgatattcagcaaagagctctgaatctgcaggctgccagtatcatcacctct 404
Query: 180 agcatgcaacctcttcatatggtgtcattgcag 212
|||||||||||||||||||||||||||||||||
Sbjct: 405 agcatgcaacctcttcatatggtgtcattgcag 437
Score = 155 bits (78), Expect = 9e-38
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 211 agaaatatatggaagaaaaaatcggtcctggagagccattattgtggagtcaatctatta 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agaaatatatggaagaaaaaatcggtcctggagagccattattgtggagtcaatctatta 586
Query: 271 tcgagaagggtctgcttg 288
||||||||||||||||||
Sbjct: 587 tcgagaagggtctgcttg 604