Jatropha Genome Database

JcCB0369011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0369011.10 - phase: 0 /pseudo/partial
         (479 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03171                                                             76   9e-14

>KJC_c03171 
          Length = 758

 Score = 75.8 bits (38), Expect = 9e-14
 Identities = 110/134 (82%)
 Strand = Plus / Plus

                                                                       
Query: 346 tatcaagaaatgctcactcacctccctctttgctccattcctaaccctaaaaaggtatta 405
           |||||||||||| | |||||||||||||||||||| ||||| ||||| || ||||| || 
Sbjct: 169 tatcaagaaatgattactcacctccctctttgctcaattccaaacccaaagaaggttttg 228

                                                                       
Query: 406 ctaattggaggaggtgatggtggcattctaagagaaatttctcgacattcttctgttaat 465
            | ||||| ||||| ||||||||  | ||  | ||| |  ||||||||||||||||| | 
Sbjct: 229 gttattggcggaggagatggtggggtcctgcgggaagtggctcgacattcttctgttgag 288

                         
Query: 466 cagattgatatatg 479
           |||||||| |||||
Sbjct: 289 cagattgacatatg 302