Jatropha Genome Database

JcCB0367641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0367641.10 - phase: 0 /pseudo/partial
         (813 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01856                                                            561   e-160
KJC_c07070                                                            145   2e-34

>KJC_c01856 
          Length = 933

 Score =  561 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 403 ggtgttcctgagctgacaagagaaatagaaaaaggaaatattttctgtccaagaagtgac 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 ggtgttcctgagctgacaagagaaatagaaaaaggaaatattttctgtccaagaagtgac 874

                                                                       
Query: 463 tctctctcaagggaagattgtagtagtcccaacaaacctgaaattgactgtgaattaagt 522
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 873 tctctctcaagggaagattgtagtagtcccaacaaacctgaaattgactgcgaattaagt 814

                                                                       
Query: 523 ggagagaagacgtgtaggtcattacaatttggaaatggagataaaagtgatgatgtctct 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ggagagaagacgtgtaggtcattacaatttggaaatggagataaaagtgatgatgtctct 754

                                                                       
Query: 583 gagacctccatggtggattctatatcagcattggatatttcgcctgatgaagttgtagga 642
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gagacctccatggtggattctatatcagcattggatatttcgcctgatgaagttgtagga 694

                                                          
Query: 643 ataattggtcagaaacatttctggaaagcaagaagggcaattgtcaa 689
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ataattggtcagaaacatttctggaaagcaagaagggcaattgtcaa 647


>KJC_c07070 
          Length = 993

 Score =  145 bits (73), Expect = 2e-34
 Identities = 87/89 (97%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctgggatgggtggatgtctttcctaaatctcagaatggtattgatgggggaaaaccc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 907 aatctgggatgggtggatgtctt-cctaaatctcagaatggtattgatgggggaaaaccc 965

                                        
Query: 61  actcccttcagccaaaattatttaagtca 89
           ||||||||||||| |||||||||||||||
Sbjct: 966 actcccttcagcc-aaattatttaagtca 993