Jatropha Genome Database

JcCB0365841.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0365841.10 - phase: 0 /pseudo
         (348 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03660                                                            551   e-157
KJC_c09096                                                             88   2e-17

>KJC_c03660 
          Length = 1531

 Score =  551 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggaagcaagtgccggcatggtggccgggtcttaccggaggaatgagctggtccggatt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 atggaagcaagtgccggcatggtggccgggtcttaccggaggaatgagctggtccggatt 1306

                                                                        
Query: 61   cgccacgattccgatagtgggcccaaacccctcaagaatttgaatggccaaacttgtcaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 cgccacgattccgatagtgggcccaaacccctcaagaatttgaatggccaaacttgtcaa 1246

                                                                        
Query: 121  atctgtggtgataatgttggagttacagccagtggtgacacatttgttgcttgcaatgag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 atctgtggtgataatgttggagttacagccagtggtgacacatttgttgcttgcaatgag 1186

                                                                        
Query: 181  tgtgcttttccggtttgccgcccttgttatgagtacgagcggaaagatggtactcagtct 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 tgtgcttttccggtttgccgcccttgttatgagtacgagcggaaagatggtactcagtct 1126

                                                  
Query: 241  tgtccccagtgcaagactaggtacagaaggcacaaagg 278
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 tgtccccagtgcaagactaggtacagaaggcacaaagg 1088


>KJC_c09096 
          Length = 603

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 163 tttgttgcttgcaatgagtgtgcttttccggtttgccgcccttgttatgagtacgagcgg 222
           |||||||||||| |||  ||||| ||||| |||||||| || ||||||||||| ||| ||
Sbjct: 422 tttgttgcttgccatgtttgtgcatttcctgtttgccggccatgttatgagtatgagagg 363

                                           
Query: 223 aaagatggtactcagtcttgtccccagtgcaa 254
           |||||||||| |||||||||||| || |||||
Sbjct: 362 aaagatggtaatcagtcttgtccgcaatgcaa 331