Jatropha Genome Database

JcCB0357671.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0357671.10 + phase: 0 /pseudo/partial
         (734 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05971                                                            547   e-155

>KJC_c05971 
          Length = 505

 Score =  547 bits (276), Expect = e-155
 Identities = 302/307 (98%), Gaps = 4/307 (1%)
 Strand = Plus / Plus

                                                                       
Query: 349 ctttttcgaggcagaaactacaactataggactcgcccccgctttcctcttatgctgtgg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctttttcgaggcagaaactacaactataggactcgcccccgctttcctcttatgctgtgg 60

                                                                       
Query: 409 aaacctgttacacctgtgtatccgagattgattcaacgggctccggagggtctaacagtg 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaacctgttacacctgtgtatccgagattgattcaacgggctccggagggtctaacagtg 120

                                                                       
Query: 469 gaagaagcagctgaaatgcgcaagaaaggacgggacttgataccgatacgcaaactagca 528
           ||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||
Sbjct: 121 gaagaagcagctgaaatgcgc-agaaag--agggacttgataccgatacgcaaactagca 177

                                                                       
Query: 529 agaaatggtgtgttctataatctagcacatgaagtcagactggcatttcaagtatgtgaa 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 agaaatggtgtgttctataatctagcacatgaagtcagactggcatttcaagtatgtgaa 237

                                                                       
Query: 589 ttggtcagaataaattgtcaagcgattgtaagaagtgactgccggaaaattggtgccaaa 648
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttggtcag-ataaattgtcaagcgattgtaagaagtgactgccggaaaattggtgccaaa 296

                  
Query: 649 ctcaagg 655
           |||||||
Sbjct: 297 ctcaagg 303