Jatropha Genome Database

JcCB0341721.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0341721.10 + phase: 0 /partial
         (240 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01697                                                            474   e-134
KJC_c04620                                                             50   2e-06

>KJC_c01697 
          Length = 1644

 Score =  474 bits (239), Expect = e-134
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtcatagcacatcttttaaagccacgtggttggaagcctcctgttcgtaggcaatttttc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 gtcatagcacatcttttaaagccacgtggttggaagcctcctgttcgtaggcaatttttc 1310

                                                                        
Query: 61   ttggattgcaatgagatagcagacctttgtgatagtgttgaaagaatattttcaagtgaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 ttggattgcaatgagatagcagacctttgtgatagtgttgaaagaatattttcaagtgaa 1250

                                                                        
Query: 121  ccaagtgtgttacaactgagggctcctatcaagatttttggtgatttgcatgggcagttt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 ccaagtgtgttacaactgagggctcctatcaagatttttggtgatttgcatgggcagttt 1190

                                                                       
Query: 181  ggggatctaatgcgtctttttgatgaatatggtgcaccttcaacagctggtgatattgc 239
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 ggggatctaatgcgtctttttgatgaatatggtgcaccttcaacagctggtgatattgc 1131


>KJC_c04620 
          Length = 975

 Score = 50.1 bits (25), Expect = 2e-06
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 156 ttttggtgatttgcatgggcagtttggggatctaatgcgtctttttgatgaatatgg 212
           |||||||||| | ||||| |||||||| ||| | |||||||| || |||||||||||
Sbjct: 917 ttttggtgatcttcatggacagtttggtgatttgatgcgtctattcgatgaatatgg 861