Jatropha Genome Database

JcCB0341321.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0341321.20 - phase: 0 /partial
         (345 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09444                                                            678   0.0  

>KJC_c09444 
          Length = 785

 Score =  678 bits (342), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggtcaatattagcagagatggcataggggctgatacttcatcttaccacagcgatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtggtcaatattagcagagatggcataggggctgatacttcatcttaccacagcgatttc 309

                                                                       
Query: 61  ataaggcacattcctctggaatccattgatccatcattggcaattggattttattgtcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ataaggcacattcctctggaatccattgatccatcattggcaattggattttattgtcga 249

                                                                       
Query: 121 gacaaagatgattttgatgaattctgttttctggcatcaaagctggcagatgactctcat 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 248 gacaaagatgattttgatgaattcngttttctggcatcaaagctggcagatgactctcat 189

                                                                       
Query: 181 ggggcacctttgtttactgtggctcattcccataaattgccgaagtcggtgggccgcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggggcacctttgtttactgtggctcattcccataaattgccgaagtcggtgggccgcact 129

                                                                       
Query: 241 gacacatcaaatgataatagtggggttcaagaagacgattccctaggtgtaatgcccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gacacatcaaatgataatagtggggttcaagaagacgattccctaggtgtaatgcccatg 69

                                                        
Query: 301 aatgatgctgaggctcctgtaaacgaggatgattggcaactcctt 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aatgatgctgaggctcctgtaaacgaggatgattggcaactcctt 24