Jatropha Genome Database

JcCB0338871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0338871.10 + phase: 0 /pseudo/partial
         (595 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07472                                                            256   5e-68

>KJC_c07472 
          Length = 605

 Score =  256 bits (129), Expect = 5e-68
 Identities = 220/249 (88%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 226 ttggatccatcacattctcaatac-tacaaggacaaacgctgtttggttttattctactt 284
           ||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||  |   
Sbjct: 1   ttggatccatcacattctcgatacgtacaaggacaaacacagtttggttttgttgcaacg 60

                                                                       
Query: 285 ggtattctctggcagggaatctatagtaagtcgctgctttcactataaggacttgacttc 344
           |||  ||||| |||||||||||||| | |||| |||||||| ||| ||||||||||||||
Sbjct: 61  ggtgatctctagcagggaatctatactgagtcactgctttcgctacaaggacttgacttc 120

                                                                       
Query: 345 accgagccatgcatatcccatgtgtttacgactcaataaattatcgttatcacgaattgg 404
           ||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 121 accaagccacgcatatcctatgtgtttacgactcaataaattatcattatcacgaatagg 180

                                                                       
Query: 405 gtctgttgagaaattactgtgggtccaaatgccagacttgagccagaatgaacttcaatc 464
           |||||||||||||||| ||||||||||||||| |||| | || |||||||| ||||||||
Sbjct: 181 gtctgttgagaaattattgtgggtccaaatgctagaccttagtcagaatgatcttcaatc 240

                    
Query: 465 aattgaagg 473
           |||||||||
Sbjct: 241 aattgaagg 249