Jatropha Genome Database

JcCB0336621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0336621.10 - phase: 0 /partial
         (421 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06943                                                            777   0.0  

>KJC_c06943 
          Length = 939

 Score =  777 bits (392), Expect = 0.0
 Identities = 411/415 (99%), Gaps = 3/415 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   agtgctctgccgcaaagaggtggtgaagtaaatttaactttggggggcattgacttgaat 66
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 682 agtgctctgccgcaaagaggtggtgaagtaa--ttaactttggggggcattgacttgaat 625

                                                                       
Query: 67  aattcagggagtgttgttgtcagagaggataagaagttattaactgtcttgtttcctgat 126
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aattcagggagtgttgt-gtcagagaggataagaagttattaactgtcttgtttcctgat 566

                                                                       
Query: 127 ggacgtgatgggcgagcattcaccctcaaggctgagacgtccgaagatttgtatgagtgg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggacgtgatgggcgagcattcaccctcaaggctgagacgtccgaagatttgtatgagtgg 506

                                                                       
Query: 187 aagacagccctagaacatgcccttgcgcaagcaccaagtgctgcccttgttatgggacat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagacagccctagaacatgcccttgcgcaagcaccaagtgctgcccttgttatgggacat 446

                                                                       
Query: 247 aatggaatttttcgaagtgatacaaatgaagcaattgaaggatctttccatcaatggagg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatggaatttttcgaagtgatacaaatgaagcaattgaaggatctttccatcaatggagg 386

                                                                       
Query: 307 gataaacgtcctgttaaatcattggttgttggaaggccaattttgcttgcccttgaagat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gataaacgtcctgttaaatcattggttgttggaaggccaattttgcttgcccttgaagat 326

                                                                  
Query: 367 attgatggaggaccatcattcctcgagaaagctcttagatttcttgagaaatttg 421
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgacggaggaccatcattcctcgagaaagctcttagatttcttgagaaatttg 271