Jatropha Genome Database

JcCB0335101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0335101.10 - phase: 0 /pseudo/partial
         (1052 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08550                                                             70   1e-11
KJC_c01493                                                             54   7e-07

>KJC_c08550 
          Length = 532

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                             
Query: 34 cagaggtgggctatcattcggaagagacaaggcac 68
          |||||||||||||||||||||||||||||||||||
Sbjct: 37 cagaggtgggctatcattcggaagagacaaggcac 3


>KJC_c01493 
          Length = 1777

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 269  caaaacctcaagtaaagatgagcaacttagtgaag 303
            |||||||| |||||||||||||||||||| |||||
Sbjct: 1392 caaaacctaaagtaaagatgagcaacttaatgaag 1426