Jatropha Genome Database

JcCB0333061.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0333061.10 - phase: 0 /pseudo/partial
         (789 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06878                                                            184   2e-46
KJC_c07752                                                            117   4e-26
KJC_s19978                                                             92   2e-18

>KJC_c06878 
          Length = 639

 Score =  184 bits (93), Expect = 2e-46
 Identities = 211/249 (84%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttttgtgtggttcattcttacactgaagaagaagatgtacaagtatcaatttggtca 60
           ||||||| ||||||||||||| || || |||| |||||||||||||||||||||||| ||
Sbjct: 392 aggttttatgtggttcattctcacgctaaaga-gaagatgtacaagtatcaatttggcca 450

                                                                       
Query: 61  atatgcttggacgcacatgattctcattgtagtgtttactcagtctgcttttactgtagc 120
            ||||| ||||||||||||||||| ||||| ||||||||||| ||  |||| ||||| ||
Sbjct: 451 gtatgcatggacgcacatgattcttattgtggtgtttactcaatcctctttcactgtggc 510

                                                                       
Query: 121 caacattttcgaagggatcttttggtttcttctcccagcatcgctcattgccatcaatga 180
           ||| ||||| ||||| || || ||||||||||| |||||  | || |||| |||||| ||
Sbjct: 511 caatatttttgaaggaattttctggtttcttcttccagccacactaattgtcatcaacga 570

                                                                       
Query: 181 tgttgctgcttatttctttggtttcttttttgggaaaacgcctttgataaagttatctcc 240
             ||  ||||||| |||| |||||||| ||||| ||||| |||||||| |||||||| ||
Sbjct: 571 catttttgcttatatcttcggtttcttctttggaaaaacccctttgatcaagttatcacc 630

                    
Query: 241 aaagaaaac 249
           |||||||||
Sbjct: 631 aaagaaaac 639


>KJC_c07752 
          Length = 432

 Score =  117 bits (59), Expect = 4e-26
 Identities = 140/167 (83%)
 Strand = Plus / Minus

                                                                       
Query: 493 tttgcatcgataattgcaccttttggaggctttttcgctagtggcttcaagagagctttt 552
           ||||| || ||||| |||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 407 tttgcctcaataatagcaccttttggaggcttttttgcaagtggttttaaaagagctttt 348

                                                                       
Query: 553 aagatcaaggattttggggatagcatacccggacatggtggatttaccgatagaatggac 612
           ||  ||||||||||||| || || || || || ||||||||| |||| ||||||||||| 
Sbjct: 347 aaagtcaaggattttggtgacagtattcctggccatggtggaattacagatagaatggat 288

                                                          
Query: 613 tgtcaaatgataatggccgttttcgcatacatatatcatcagtcatt 659
           ||||| ||| | ||||| || || |||||||| |||||||| |||||
Sbjct: 287 tgtcagatggtgatggctgtgtttgcatacatctatcatcaatcatt 241


>KJC_s19978 
          Length = 332

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                       
Query: 42  acaagtatcaatttggtcaatatgcttggacgcacatgattctcattgtagtgtttactc 101
           |||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 1   acaagtatcaatttggccagtatgcatggacgcacatgattcttattgtggtgtttactc 60

                                             
Query: 102 agtctgcttttactgtagccaacattttcgaagg 135
           | ||  |||| ||||| ||||| ||||| |||||
Sbjct: 61  aatcctctttcactgtggccaatatttttgaagg 94