Jatropha Genome Database
- JcCB0317901.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0317901.10 - phase: 0 /partial
(841 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c08231 961 0.0
KJC_c03921 654 0.0
>KJC_c08231
Length = 564
Score = 961 bits (485), Expect = 0.0
Identities = 509/513 (99%), Gaps = 3/513 (0%)
Strand = Plus / Plus
Query: 1 aacctgagtccttggttccctgttgctcgatttcatggttctcgtcttgcttcagctcct 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 aacctgagtccttggttcc-tgttgctcgatttcatggttctcgtcttgcttcagctcct 74
Query: 61 tcactttcaccctttcagcacagcctggagagctcatctgatggcaaaggatcttttgtt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 tcaccttcaccctttcagcacagcctggagagctcatctgatggcaaaggatcttttgtt 134
Query: 121 tgggccaaaaaagttgcacgtacatcttcatcagctagtgttggtgctgccattgttgaa 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgggccaaaa-agttgcacgtacatcttcatcagctagtgttggtgctgccattgttgaa 193
Query: 181 gcagagaatagtctggaaatagaagcacatgaaaacaaagaagaattgaaaacgaagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gcagagaatagtctggaaatagaagcacatgaaaacaaagaagaattgaaaacgaagctt 253
Query: 241 aaggagagacttcgtgagaagtctgatgtttttaactcaaaaaatccagaagaagacaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaggagagacttcgtgagaagtctgatgtttttaactcaaaaaatccagaagaagacaag 313
Query: 301 gttaaattaggagaaccaggatggaaggaaaggtattatgaagaaaagttttatgttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gttaaattaggagaaccaggatggaaggaaaggtattatgaagaaaagttttatgttaaa 373
Query: 361 accttggaggagcttgaagacataagaagggatgttgccttgaggtacactgaagggcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 accttggaggagcttgaagacataagaagggatgttgccttgaggtacactgaagggcta 433
Query: 421 tgttgggtcatgcactattactatgaaggagtttgttcctggcagtggttttatccctat 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 434 tgttgggtcatgcactattactatgaaggagtttgttcctggcagtgg-tttatccctat 492
Query: 481 cattatgcaccctttgcttctgatctcaaaaat 513
|||||||||||||||||||||||||||||||||
Sbjct: 493 cattatgcaccctttgcttctgatctcaaaaat 525
>KJC_c03921
Length = 543
Score = 654 bits (330), Expect = 0.0
Identities = 358/362 (98%), Gaps = 4/362 (1%)
Strand = Plus / Minus
Query: 482 attatgcacccttt-gcttctgat-ctcaaaaatctagatcagatgaatattgagtttga 539
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 543 attatgcaccctttcgcttctgatactcaaaaatctagatcagatgaatattgagtttga 484
Query: 540 actaggttctccattcaaaccattcaatcagcttttgggagtttttcctgctgcaagttc 599
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 483 actaggttctccattcaa-ccattcaatcagcttttgggagtttt-cctgctgcaagttc 426
Query: 600 ccatgctcttcctgtgaattatagaaaattgatgactgatcccaattcacccattattga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ccatgctcttcctgtgaattatagaaaattgatgactgatcccaattcacccattattga 366
Query: 660 tttttaccccactgattttgaagtggacatgaatgggaagcggtatgcttggcagggtat 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttttaccccactgattttgaagtggacatgaatgggaagcggtatgcttggcagggtat 306
Query: 720 tgcaaagctgcccttcattgatgaagctcgcctacttgcagaggttaaaaagattgagca 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgcaaagctgcccttcattgatgaagctcgcctacttgcagaggttaaaaagattgagca 246
Query: 780 tacattaacggaggaggaagcaaggagaaacagtgtgatgtttgacatgctttttgtgtt 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tacattaacggaggaggaagcaaggagaaacagtgtgatgtttgacatgctttttgtgtt 186
Query: 840 at 841
||
Sbjct: 185 at 184