Jatropha Genome Database
- JcCB0314321.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0314321.10 - phase: 2 /pseudo/partial
(831 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_s14915 224 3e-58
KJC_c07985 76 2e-13
KJC_s18679 60 9e-09
KJC_c01940 60 9e-09
KJC_c06508 50 9e-06
>KJC_s14915
Length = 467
Score = 224 bits (113), Expect = 3e-58
Identities = 150/166 (90%), Gaps = 16/166 (9%)
Strand = Plus / Minus
Query: 1 gccaaccaaaacgacatctgctgactacaggttggagtgtgtttgtcagcacaaaaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gccaaccaaaacgacatctgctgactacaggttggagtgtgtttgtcagcacaaaaagac 107
Query: 61 tttttgccggtgattctgttttatttata----------------agctcctcttgggca 104
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 106 tttttgccggtgattctgttttatttataagagatgaaaagtcacagctcctcttgggca 47
Query: 105 ttaggcgtgctaataggcaacagccagcactctcttcgtcagtcat 150
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ttaggcgtgctaataggcaacagccagcactctcttcgtcagtcat 1
>KJC_c07985
Length = 338
Score = 75.8 bits (38), Expect = 2e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 158 gacagtatgcatattggaattcttgctgctgcagcccatgctgctgcaaataacagtcca 217
||||| ||||| ||||| || || ||||||||||||||||| || ||||||||||| ||
Sbjct: 253 gacagcatgcacattgggatcctagctgctgcagcccatgcagcagcaaataacagcccc 194
Query: 218 tttgctgtattttacaatccaagggc 243
||| |||| ||||| |||||||||||
Sbjct: 193 tttactgtgttttataatccaagggc 168
>KJC_s18679
Length = 331
Score = 60.0 bits (30), Expect = 9e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 362 tacatgggcacaatcactggcatcagtgatttggatccagtgaggtggaaaaattcacaa 421
|||||||||||||| || ||||| |||||||| ||||| || |||||| |||||||||
Sbjct: 150 tacatgggcacaataaccggcataagtgatttagatcctgttaggtggccaaattcacat 209
Query: 422 tggcgc 427
||||||
Sbjct: 210 tggcgc 215
>KJC_c01940
Length = 991
Score = 60.0 bits (30), Expect = 9e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 362 tacatgggcacaatcactggcatcagtgatttggatccagtgaggtggaaaaattcacaa 421
|||||||||||||| || ||||| |||||||| ||||| || |||||| |||||||||
Sbjct: 361 tacatgggcacaataaccggcataagtgatttagatcctgttaggtggccaaattcacat 420
Query: 422 tggcgc 427
||||||
Sbjct: 421 tggcgc 426
>KJC_c06508
Length = 805
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 164 atgcatattggaattcttgctgctgcagcccatgctgctgc 204
||||||||||| | |||||||||||||| |||||||||||
Sbjct: 732 atgcatattggtgtccttgctgctgcagctcatgctgctgc 692