Jatropha Genome Database

JcCB0309941.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0309941.10 + phase: 0 
         (456 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02175                                                            278   1e-74

>KJC_c02175 
          Length = 700

 Score =  278 bits (140), Expect = 1e-74
 Identities = 173/179 (96%), Gaps = 5/179 (2%)
 Strand = Plus / Plus

                                                                       
Query: 262 gtagggga-tttgacgggagcggatttgaaaggaaagagagtttttgtgagggctgattt 320
           |||||||| ||||||||||||||||||||| |  ||||||||||| ||||||||||||||
Sbjct: 10  gtaggggagtttgacgggagcggatttgaagg--aagagagtttt-gtgagggctgattt 66

                                                                       
Query: 321 gaatgtgcctttggatgacaaccagaacatcactgatgacactagaattagagctgcaat 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  gaatgtgcctttggatgacaaccagaacatcactgatgacactagaattagagctgcaat 126

                                                                      
Query: 381 ccccacgattaagcatttgattcagaatggtgctaaagtcattctttctactcatttgg 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 -cccacgattaagcatttgattcagaatggtgctaaagtcattctttctactcatttgg 184