Jatropha Genome Database

JcCB0309911.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0309911.10 + phase: 1 /partial
         (747 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06314                                                            969   0.0  

>KJC_c06314 
          Length = 1241

 Score =  969 bits (489), Expect = 0.0
 Identities = 510/513 (99%), Gaps = 3/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 66  atttgggcaagtggagtcttgaatcctgaaagcagtgcatctggggacatggaaacatct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atttgggcaagtggagtcttgaatcctgaaagcagtgcatctggggacatggaaacatct 455

                                                                       
Query: 126 gtgaaaaggggcgtgtgggcaatgattgcagtttttcttgcttattgcttgctacaggcc 185
           |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 454 gtgaaa-ggggcgtgtgggcaatgattgcagtttttct-gcttat-gcttgctacaggcc 398

                                                                       
Query: 186 ccttcaacggttctgataaggccacatccagcaatttggcgcttagttcatggaatggct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ccttcaacggttctgataaggccacatccagcaatttggcgcttagttcatggaatggct 338

                                                                       
Query: 246 gtagtctatcttgttgccctcacatttttgcttttccagaagcgtgatgatgctcggcag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtagtctatcttgttgccctcacatttttgcttttccagaagcgtgatgatgctcggcag 278

                                                                       
Query: 306 tttatgaagtttctgcaccccgatcttggagttgaacttcctgaaagatcatatggcgca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttatgaagtttctgcaccccgatcttggagttgaacttcctgaaagatcatatggcgca 218

                                                                       
Query: 366 gattgtcgaatttacatgcctgaaaatcccacaagcaggtttaagaatgtttatgataca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gattgtcgaatttacatgcctgaaaatcccacaagcaggtttaagaatgtttatgataca 158

                                                                       
Query: 426 ctttttgatgaatttgtactggctcatatatttggatggtggggcaaggcgatattattg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ctttttgatgaatttgtactggctcatatatttggatggtggggcaaggcgatattattg 98

                                                                       
Query: 486 cgtaatcagccacttctttgggtattatcaattggatttgagtttttggagtttaccttc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  cgtaatcagccacttctttgggtattatcaattggatttgagtttttggagtttaccttc 38

                                            
Query: 546 cgccatatgctgccaaacttcaatgagtgctgg 578
           |||||||||||||||||||||||||||||||||
Sbjct: 37  cgccatatgctgccaaacttcaatgagtgctgg 5