Jatropha Genome Database

JcCB0308331.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0308331.10 + phase: 0 /partial
         (180 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00967                                                            357   6e-99
KJC_s20636                                                            107   9e-24

>KJC_c00967 
          Length = 1010

 Score =  357 bits (180), Expect = 6e-99
 Identities = 180/180 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccttcccgtcgaagaactctcttgaaggtcataatcctcggcgatagcggggtcggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 atgccttcccgtcgaagaactctcttgaaggtcataatcctcggcgatagcggggtcggg 215

                                                                       
Query: 61  aagacctctttgatgaatcaatatgtgaataagaagtttagcaatcaatataaggcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aagacctctttgatgaatcaatatgtgaataagaagtttagcaatcaatataaggcaaca 275

                                                                       
Query: 121 atcggagctgatttcttgactaaggaagtgcagtttgaagataggctcttcactttacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atcggagctgatttcttgactaaggaagtgcagtttgaagataggctcttcactttacag 335


>KJC_s20636 
          Length = 410

 Score =  107 bits (54), Expect = 9e-24
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1   atgccttcccgtcgaagaactctcttgaaggtcataatcctcggcgatagcggg 54
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 atgccttcccgtcgaagaactctcttgaaggtcataatcctcggcgatagcggg 215