Jatropha Genome Database

JcCB0305141.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0305141.40 - phase: 2 /pseudo/partial
         (1015 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11548                                                            517   e-146

>KJC_c11548 
          Length = 785

 Score =  517 bits (261), Expect = e-146
 Identities = 261/261 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctggtatgttgatcaaggcattgtagctccagatgcagatggttcagcttctttcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttctggtatgttgatcaaggcattgtagctccagatgcagatggttcagcttctttcaga 432

                                                                       
Query: 61  aagacaattcagagacaagaggagaagtggtggctgcctgtaccccgtatccccgctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagacaattcagagacaagaggagaagtggtggctgcctgtaccccgtatccccgctggt 372

                                                                       
Query: 121 ggcctaagtgataattcaagaaagcagttgaaccatacacgcgaatgcactaatcaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggcctaagtgataattcaagaaagcagttgaaccatacacgcgaatgcactaatcaaata 312

                                                                       
Query: 181 ctaaaagctgcaatggctatcaatagtattgctttagctgaaatggaagttcctgactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctaaaagctgcaatggctatcaatagtattgctttagctgaaatggaagttcctgactca 252

                                
Query: 241 tacatggaagcacttccaaag 261
           |||||||||||||||||||||
Sbjct: 251 tacatggaagcacttccaaag 231



 Score =  280 bits (141), Expect = 6e-75
 Identities = 143/144 (99%)
 Strand = Plus / Minus

                                                                       
Query: 262 cctgtcaactgaaaatgtagctctagatattgcaaaccgtgtggaatctgcaatatatgt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cctgtcaactgaaaatgtagctctagatattgcaaaccgtgtggaatctgcaatatatgt 85

                                                                       
Query: 322 atggcgtaagagagttcattcaaagcctccaacatatccaaaccggtccacagcaagatc 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  atggcgtaagagagttcattcaaagcctccaacatatccaaaccggtccacagcaagatc 25

                                   
Query: 382 atcatgggagatagtgaaggactt 405
           ||||||||| ||||||||||||||
Sbjct: 24  atcatggganatagtgaaggactt 1