Jatropha Genome Database

JcCB0304081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0304081.10 + phase: 0 
         (408 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01293                                                            731   0.0  

>KJC_c01293 
          Length = 870

 Score =  731 bits (369), Expect = 0.0
 Identities = 369/369 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggcgactgccctagcccgtatctctagaaaagcactaacctccacgatctccccacagcg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggcgactgccctagcccgtatctctagaaaagcactaacctccacgatctccccacagcg 60

                                                                       
Query: 63  ccacctccttaaccgatcgttttccgctgaggcatcaaccaaatcgattactccgtcgcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccacctccttaaccgatcgttttccgctgaggcatcaaccaaatcgattactccgtcgcc 120

                                                                       
Query: 123 ggatcgagtgaagtgggactatcgaggtcagaggcagataatcccgttgggccagtggct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggatcgagtgaagtgggactatcgaggtcagaggcagataatcccgttgggccagtggct 180

                                                                       
Query: 183 cccgaaggtagccgttgatgcttatgttgcaccaaatgttgttctagcgggtcaagtcac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cccgaaggtagccgttgatgcttatgttgcaccaaatgttgttctagcgggtcaagtcac 240

                                                                       
Query: 243 cgtatgcgatggagcttcagtttggagcggatcggtcctgcgaggcgatctcaacaagat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtatgcgatggagcttcagtttggagcggatcggtcctgcgaggcgatctcaacaagat 300

                                                                       
Query: 303 caccgtcggattctgctccaatgtgcaagagaggtgcgtcgttcatgctgcttggaactc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caccgtcggattctgctccaatgtgcaagagaggtgcgtcgttcatgctgcttggaactc 360

                    
Query: 363 gccaacagg 371
           |||||||||
Sbjct: 361 gccaacagg 369