Jatropha Genome Database

JcCB0295761.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0295761.10 - phase: 2 /partial
         (517 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01532                                                            654   0.0  

>KJC_c01532 
          Length = 1428

 Score =  654 bits (330), Expect = 0.0
 Identities = 363/369 (98%), Gaps = 5/369 (1%)
 Strand = Plus / Minus

                                                                       
Query: 35  ggctctttttctcatggattcacttattctggccaccctgtatcatgtgcggttgccatt 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggctctttttctcatggattcacttattctggccaccctgtatcatgtgcggttgccatt 390

                                                                       
Query: 95  gaagcactcaagatatacaagtatggagagaacattcctgagcaagtaagtaaaattgcc 154
           ||||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||
Sbjct: 389 gaagcactcaagatatacaagga--gaga-aacattcctgagcaagtaagtaaaattgcc 333

                                                                       
Query: 155 ccaaaattccaagatggtttaaaagcattctccgacagtcccatcataggagagattcgg 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccaaaattccaagatggtttaaaagcattctccgacagtcccatcataggagagattcgg 273

                                                                       
Query: 215 ggaactggcttgattcttggtacagaatttaccgacaataagtcacctaatgatccattt 274
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gga-ctggcttgattcttggtacagaatttaccgacaataagtcacctaatgatccattt 214

                                                                       
Query: 275 cctcctgaatggggggttggcgcatattttggagcacaatgtgagaagcatgggatgttg 334
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cctcctga-tggggggttggcgcatattttggagcacaatgtgagaagcatgggatgttg 155

                                                                       
Query: 335 gtgcgagttgcaggggataacataatgatgtctcctccacttacaataagccctgaagag 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gtgcgagttgcaggggataacataatgatgtctcctccacttacaataagccctgaagag 95

                    
Query: 395 gttgacgag 403
           |||||||||
Sbjct: 94  gttgacgag 86