Jatropha Genome Database

JcCB0293861.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0293861.20 - phase: 0 /partial
         (306 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00186                                                            159   5e-39
KJC_c00500                                                            135   7e-32

>KJC_c00186 
          Length = 1454

 Score =  159 bits (80), Expect = 5e-39
 Identities = 206/248 (83%)
 Strand = Plus / Plus

                                                                        
Query: 57   tggtgctggactggcctcatatccaattgacactgttcgtagaagaatgatgatgacatc 116
            |||||||||| ||||||| || || ||||| || || |||||||| ||||||||||| ||
Sbjct: 951  tggtgctggattggcctcttaccccattgatacagtccgtagaaggatgatgatgacctc 1010

                                                                        
Query: 117  aggtgaagctgttaagtataagagctcattcgatgccttctctcagataattaagaatga 176
            ||| |||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||
Sbjct: 1011 aggagaagctgtgaagtacaagagctctttggatgcattttctcagatcatcaagaatga 1070

                                                                        
Query: 177  aggggctaaatctctgttcaaaggtggaggtgcaaacatcctgcgcgcaattgctggtgc 236
            |||| ||||||| || ||||| || |  |||||||||||||| || ||  | || |||||
Sbjct: 1071 agggactaaatccctcttcaagggagctggtgcaaacatccttcgtgctgtagcaggtgc 1130

                                                                        
Query: 237  tggtgttcttgctggatatgataagcttcaggttattgcatttggaaagaaatatggttc 296
            |||||| ||||| || ||||| || |||||| ||||||  ||||| ||||||||||| ||
Sbjct: 1131 tggtgtgcttgccggttatgacaaacttcagcttattgtctttggcaagaaatatggatc 1190

                    
Query: 297  tggaggag 304
            ||| ||||
Sbjct: 1191 tggcggag 1198


>KJC_c00500 
          Length = 1361

 Score =  135 bits (68), Expect = 7e-32
 Identities = 149/176 (84%)
 Strand = Plus / Minus

                                                                       
Query: 82  attgacactgttcgtagaagaatgatgatgacatcaggtgaagctgttaagtataagagc 141
           ||||| ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| 
Sbjct: 317 attgatactgtccgtagaagaatgatgatgacctctggtgaagctgtcaagtacaagagt 258

                                                                       
Query: 142 tcattcgatgccttctctcagataattaagaatgaaggggctaaatctctgttcaaaggt 201
           ||  | |||||||||||||||||  | |||||||| || || || ||||| ||||| |||
Sbjct: 257 tctcttgatgccttctctcagatcttgaagaatgagggtgccaagtctctcttcaagggt 198

                                                                   
Query: 202 ggaggtgcaaacatcctgcgcgcaattgctggtgctggtgttcttgctggatatga 257
           | ||| |||||||| || || || ||||||||||||||||| |||||||| |||||
Sbjct: 197 gcaggagcaaacattctccgtgctattgctggtgctggtgtgcttgctggttatga 142