Jatropha Genome Database

JcCB0290761.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0290761.10 + phase: 0 /partial
         (1185 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01610                                                             76   2e-13

>KJC_c01610 
          Length = 1481

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                       
Query: 566 tacttagttgggacaaaaagcatgctggtgctcagttgcttctaagccgtatgagaattt 625
           ||||||||||||| || |||| | ||||||||||| ||||| | || ||| ||||| | |
Sbjct: 291 tacttagttgggataacaagcttactggtgctcaggtgcttttgagtcgtttgagattgt 232

                                                         
Query: 626 tcctgggttatggctacccatatgaagaaatgttgaggacatttca 671
           ||||| ||  ||| || |||||||||||||| ||||||||||||||
Sbjct: 231 tcctgagtcctggatatccatatgaagaaatattgaggacatttca 186



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 95/114 (83%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttgagttggagcgtgatcgaatacagcgcaaaatatgaagctgttggtgaattagat 60
           |||||||| |||||||| ||||| ||||| || ||||||||||||| ||||||  |  | 
Sbjct: 863 atgttgagctggagcgtcatcgagtacagtgctaaatatgaagctgctggtgagcttaac 804

                                                                 
Query: 61  cacgtcaagaacataattaaatggggcactgactaccttctcaagaccttcaac 114
           || |||||| | || ||||| ||||||||||| || ||||||||||| ||||||
Sbjct: 803 catgtcaaggatattattaagtggggcactgattatcttctcaagactttcaac 750