Jatropha Genome Database
- JcCB0289141.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0289141.10 + phase: 2 /partial
(592 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02389 1118 0.0
KJC_s17010 248 1e-65
KJC_c01445 88 3e-17
KJC_c00178 60 6e-09
KJC_c10941 50 6e-06
KJC_c00035 50 6e-06
>KJC_c02389
Length = 733
Score = 1118 bits (564), Expect = 0.0
Identities = 564/564 (100%)
Strand = Plus / Minus
Query: 29 gtagcacatcaacatgggaaggactatgtggacccacctccagctccattgttggacatt 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtagcacatcaacatgggaaggactatgtggacccacctccagctccattgttggacatt 674
Query: 89 gaagagctaacgaaatggtcattttacagagctgtaattgcagagcttgtggccacactt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaagagctaacgaaatggtcattttacagagctgtaattgcagagcttgtggccacactt 614
Query: 149 atcttcctttttgtcactgtagccactgttatagccaacaaagcctcaactatgtctagt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atcttcctttttgtcactgtagccactgttatagccaacaaagcctcaactatgtctagt 554
Query: 209 ggatgtggcggcgttggtcttcttggcgttgcttggtcttttggtagcacgattttcatt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggatgtggcggcgttggtcttcttggcgttgcttggtcttttggtagcacgattttcatt 494
Query: 269 cttgtctattgcaccgctgggatttctggaggtcatattaatcctgcggtgacgttcggg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttgtctattgcaccgctgggatttctggaggtcatattaatcctgcggtgacgttcggg 434
Query: 329 ctgttgctggcaaggaaggtgtcgttgaatcgcgcggtggcgtatatagtggcacaatgc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgttgctggcaaggaaggtgtcgttgaatcgcgcggtggcgtatatagtggcacaatgc 374
Query: 389 gtaggagctattattggtgtagcactagtgaaaggactagtaaaggatctttacaagtcc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtaggagctattattggtgtagcactagtgaaaggactagtaaaggatctttacaagtcc 314
Query: 449 cttggcggtggtgcaaattctgttacggctggtttttcaatcggcaccggtttaggagtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cttggcggtggtgcaaattctgttacggctggtttttcaatcggcaccggtttaggagtt 254
Query: 509 gagattcttggcacatttttccttgaatacaccgtcttgtccgccactgaccctaaacgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagattcttggcacatttttccttgaatacaccgtcttgtccgccactgaccctaaacgg 194
Query: 569 aaagcccgtgactcccatgttccg 592
||||||||||||||||||||||||
Sbjct: 193 aaagcccgtgactcccatgttccg 170
>KJC_s17010
Length = 181
Score = 248 bits (125), Expect = 1e-65
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 296 ggaggtcatattaatcctgcggtgacgttcgggctgttgctggcaaggaaggtgtcgttg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaggtcatattaatcctgcggtgacgttcgggctgttgctggcaaggaaggtgtcgttg 66
Query: 356 aatcgcgcggtggcgtatatagtggcacaatgcgtaggagctattattggtgtagcacta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aatcgcgcggtggcgtatatagtggcacaatgcgtaggagctattattggtgtagcacta 6
Query: 416 gtgaa 420
|||||
Sbjct: 5 gtgaa 1
>KJC_c01445
Length = 814
Score = 87.7 bits (44), Expect = 3e-17
Identities = 107/128 (83%)
Strand = Plus / Plus
Query: 212 tgtggcggcgttggtcttcttggcgttgcttggtcttttggtagcacgattttcattctt 271
||||| || |||||| |||| ||| | |||||| |||||||| ||| ||| || ||||||
Sbjct: 144 tgtggtggggttggtattctcggcatcgcttgggcttttggtggcatgatctttattctt 203
Query: 272 gtctattgcaccgctgggatttctggaggtcatattaatcctgcggtgacgttcgggctg 331
|| || ||||| ||||| ||||| ||||| |||||||| || || |||||||||||||||
Sbjct: 204 gtttactgcactgctggtatttcaggagggcatattaacccagcagtgacgttcgggctg 263
Query: 332 ttgctggc 339
|| |||||
Sbjct: 264 ttcctggc 271
>KJC_c00178
Length = 1041
Score = 60.0 bits (30), Expect = 6e-09
Identities = 87/106 (82%)
Strand = Plus / Minus
Query: 237 ttgcttggtcttttggtagcacgattttcattcttgtctattgcaccgctgggatttctg 296
|||||||| |||||||| | | ||||||| |||||| || || || ||||| ||||| |
Sbjct: 692 ttgcttgggcttttggtggaatgattttcgctcttgtatactgtactgctggtatttcag 633
Query: 297 gaggtcatattaatcctgcggtgacgttcgggctgttgctggcaag 342
|||| || || ||||| |||||||| ||||||||||| |||||||
Sbjct: 632 gaggacacataaatccggcggtgaccttcgggctgttcttggcaag 587
>KJC_c10941
Length = 854
Score = 50.1 bits (25), Expect = 6e-06
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 211 atgtggcggcgttggtcttcttggcgttgcttggtcttttggtagcacgattttcattct 270
|||||| || ||||||||| | ||| |||| ||| | |||||| ||| ||| || || ||
Sbjct: 189 atgtggtggagttggtcttttgggcattgcatgggcctttggtggcatgatctttatcct 248
Query: 271 tgtctattgcaccgctgggatttctggaggtcatattaatcctgcggtgacgttcgggct 330
||| || ||||| || || || ||||| ||||||||||| || || ||||| || |||||
Sbjct: 249 tgtttactgcactgccggtatatctggtggtcatattaacccagcagtgacctttgggct 308
Query: 331 gttgctggcaaggaaggtgtc 351
||| | ||||| ||||||||
Sbjct: 309 gtttttagcaagaaaggtgtc 329
>KJC_c00035
Length = 958
Score = 50.1 bits (25), Expect = 6e-06
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 211 atgtggcggcgttggtcttcttggcgttgcttggtcttttggtagcacgattttcattct 270
|||||| || ||||||||| | ||| |||| ||| | |||||| ||| ||| || || ||
Sbjct: 281 atgtggtggagttggtcttttgggcattgcatgggcctttggtggcatgatctttatcct 340
Query: 271 tgtctattgcaccgctgggatttctggaggtcatattaatcctgcggtgacgttcgggct 330
||| || ||||| || || || ||||| ||||||||||| || || ||||| || |||||
Sbjct: 341 tgtttactgcactgccggtatatctggtggtcatattaacccagcagtgacctttgggct 400
Query: 331 gttgctggcaaggaaggtgtc 351
||| | ||||| ||||||||
Sbjct: 401 gtttttagcaagaaaggtgtc 421