Jatropha Genome Database

JcCB0284451.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0284451.30 - phase: 1 /partial
         (341 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00214                                                            660   0.0  
KJC_c02455                                                            137   2e-32

>KJC_c00214 
          Length = 2417

 Score =  660 bits (333), Expect = 0.0
 Identities = 340/341 (99%), Gaps = 1/341 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    acttcaatgacattattcactcaatcatcaatatggatgctgatgtgatcaccattgaga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2034 acttcaatgacattattcactcaatcatcaatatggatgctgatgtgatcaccattgaga 2093

                                                                        
Query: 61   actctcgatccgatgaaaagcttctctccgtcttccgcgagggagtgaagtatggtgctg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2094 actctcgatccgatgaaaagcttctctccgtcttccgcgagggagtgaagtatggtgctg 2153

                                                                        
Query: 121  gaattggccctggtgtttatgatatccactctcctagaataccttcaactgaggagattg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2154 gaattggccctggtgtttatgatatccactctcctagaataccttcaactgaggagattg 2213

                                                                        
Query: 181  ctgacagaattaacaagatgcttgcggttctcgagaagaacatcttgtgggttaaccctg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2214 ctgacagaattaacaagatgcttgcggttctcgagaagaacatcttgtgggttaaccctg 2273

                                                                        
Query: 241  actgtggtctcaaaactcgcaagtactctgaggtcaagcctgctctaaagaacatggttg 300
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2274 actgtggtctcaaaactcgcaagtactctgaggtcaagcctgctctaaag-acatggttg 2332

                                                     
Query: 301  ctgcagctaagctactccgcaccgagcttgccagtgccaag 341
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 ctgcagctaagctactccgcaccgagcttgccagtgccaag 2373


>KJC_c02455 
          Length = 1057

 Score =  137 bits (69), Expect = 2e-32
 Identities = 171/205 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcaatgacattattcactcaatcatcaatatggatgctgatgtgatcaccattgaga 60
           ||||||||||||| || ||||| || || || |||||||||||||| |||||||| ||||
Sbjct: 768 acttcaatgacatcatccactcgattattaacatggatgctgatgtcatcaccatagaga 827

                                                                       
Query: 61  actctcgatccgatgaaaagcttctctccgtcttccgcgagggagtgaagtatggtgctg 120
           ||||  | || ||||| ||||||||||| || ||||| |||||||||||||| ||||| |
Sbjct: 828 actcaaggtcagatgagaagcttctctcagttttccgtgagggagtgaagtacggtgcag 887

                                                                       
Query: 121 gaattggccctggtgtttatgatatccactctcctagaataccttcaactgaggagattg 180
           | |||||||||||||| ||||| || ||||| ||||| || || || || || || || |
Sbjct: 888 gcattggccctggtgtgtatgacattcactcacctaggatcccatccacggaagaaatcg 947

                                    
Query: 181 ctgacagaattaacaagatgcttgc 205
           ||||  | |||||||||||||||||
Sbjct: 948 ctgatcgtattaacaagatgcttgc 972