Jatropha Genome Database
- JcCB0283991.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0283991.10 + phase: 0 /pseudo/partial
(825 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c06439 1332 0.0
KJC_c11456 460 e-129
KJC_s20954 254 3e-67
KJC_c03163 224 3e-58
>KJC_c06439
Length = 704
Score = 1332 bits (672), Expect = 0.0
Identities = 679/680 (99%), Gaps = 1/680 (0%)
Strand = Plus / Minus
Query: 147 accaaacccatttgcaaatgaaggagaggaagttgcttctgttgcttataggtataggag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 accaaacccatttgcaaatgaaggagaggaagttgcttctgttgcttataggtataggag 645
Query: 207 gtggaaacttgatgatgatatgtatcttgttgctaggtgtgaggtgcagagtgttgtgga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gtggaaacttgatgatgatatgtatcttgttgctaggtgtgaggtgcagagtgttgtgga 585
Query: 267 ggtcaacaagcagaggtcatttttgacactgaatgctctcaatgagtttgatcctaaata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggtcaacaagcagaggtcatttttgacactgaatgctctcaatgagtttgatcctaaata 525
Query: 327 ttccggagttgattggagacagaaattggagactcaaagaggtgcggttttggctactga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttccggagttgattggagacagaaattggagactcaaagaggtgcggttttggctactga 465
Query: 387 attgaagaacaacgcgaataagttagctcgatggactgctcaagcgcttttggcaagtgc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attgaagaacaacgcgaataagttagctcgatggactgctcaagcgcttttggcaagtgc 405
Query: 447 agatttgatgaaattaggttttgtttcgagggttcatccaagagatcattataaccatgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agatttgatgaaattaggttttgtttcgagggttcatccaagagatcattataaccatgt 345
Query: 507 gatattggctgttcttgggtataagccaagggattttgctgcacagattaatttgaatac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gatattggctgttcttgggtataagccaagggattttgctgcacagattaatttgaatac 285
Query: 567 atcaaacatgtggggaattgtgaagagtattgttgatttgtgtatgaagttgaatgaggg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atcaaacatgtggggaattgtgaagagtattgttgatttgtgtatgaagttgaatgaggg 225
Query: 627 caaatacgttttggttaaagacccatcaaagccacaagtgagaatttatgaagttcctgc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 caaatacgttttggttaaagacccatcaaagccacaagtgagaatttatgaagttcctgc 165
Query: 687 tgatgcttttgagaatgattatgtggaggagcctttgcctgaggaagagcaagttcagcc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tgatgcttttgagaatgattatgtggaggagcctttgcctgaggaagagcaagttcagcc 105
Query: 747 ccctggcgaggagaccgagaatgcaaaggcagcaactgctgcaaatgatgttgaagataa 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ccctggcgaggagaccgagaatgcaaaggcagcaactgctgcaaatgatgttgaagataa 45
Query: 807 aaatattt-ctgctcaagct 825
|||||||| |||||||||||
Sbjct: 44 aaatatttactgctcaagct 25
>KJC_c11456
Length = 478
Score = 460 bits (232), Expect = e-129
Identities = 246/248 (99%), Gaps = 2/248 (0%)
Strand = Plus / Plus
Query: 578 ggggaattgtgaagagtattgttgatttgtgtatgaagttgaatgagggcaaatacgttt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ggggaattgtgaagagtattgttgatttgtgtatgaagttgaatgagggcaaatacgttt 66
Query: 638 tggttaaagacccatcaaagccacaagtgagaatttatgaagttcctgctgatgcttttg 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tggttaaagacccatcaaagccacaagtgagaatttatgaagttcctgctgatgcttttg 126
Query: 698 agaatgattatgtggaggagcctttgcctgaggaagagcaagttcagccccctggcgagg 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 agaatgattatgtggaggagcctttgcctgaggaagagcaagttcagccccctggcgagg 186
Query: 758 agaccgagaatgcaaaggcagcaactgctgcaaatgatgttgaagataaaaatatttctg 817
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aga-cgag-atgcaaaggcagcaactgctgcaaatgatgttgaagataaaaatatttctg 244
Query: 818 ctcaagct 825
||||||||
Sbjct: 245 ctcaagct 252
>KJC_s20954
Length = 150
Score = 254 bits (128), Expect = 3e-67
Identities = 149/152 (98%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 14 acatgagccatt-accagaggcgaaagatgatatgaactctgcttattcattgagtgttg 72
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 150 acatgagccatttaccagaggc-aaagatgatatgaactctgcttattcattgagtgttg 92
Query: 73 aggcagcctatattaatctagaacttttcacagcaggttctaattagagatgggaataag 132
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 aggcagcctatattaatc-agaacttttcacagcaggttctaattagagatgggaataag 33
Query: 133 gttgcctttgatgaaccaaacccatttgcaaa 164
||||||||||||||||||||||||||||||||
Sbjct: 32 gttgcctttgatgaaccaaacccatttgcaaa 1
>KJC_c03163
Length = 1285
Score = 224 bits (113), Expect = 3e-58
Identities = 126/129 (97%), Gaps = 1/129 (0%)
Strand = Plus / Minus
Query: 1 tgcatgagacctcacatgagccattaccagaggcgaaagatgatatgaactctgcttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgcatgagacctcacatgagccattaccagaggcgaaagatgatatgaactctgcttatt 298
Query: 61 cattgagtgttgaggcagcctatattaatctagaacttttcacagcaggttctaattaga 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 297 cattgagtgttgaggcagcctatattaatc-agaacttttcacagcaggttctaatcaga 239
Query: 121 gatgggaat 129
||||||||
Sbjct: 238 aatgggaat 230