Jatropha Genome Database
- JcCB0280981.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0280981.10 + phase: 1 /pseudo/partial
(808 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01682 1370 0.0
KJC_c00976 165 2e-40
KJC_c03564 80 9e-15
>KJC_c01682
Length = 1341
Score = 1370 bits (691), Expect = 0.0
Identities = 698/699 (99%), Gaps = 1/699 (0%)
Strand = Plus / Minus
Query: 110 gcaagcactatatggttatgatccagttttgactgaggaagatttggaaccaaacattat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gcaagcactatatggttatgatccagttttgactgaggaagatttggaaccaaacattat 689
Query: 170 cgtcaagagttgttgcggatcaagaaagaaaggaagaagcggtaataagaagtatattga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cgtcaagagttgttgcggatcaagaaagaaaggaagaagcggtaataagaagtatattga 629
Query: 230 caagaagagggcaatgaaaagaactgaatccactgttcccattttcaatatggaagatat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 caagaagagggcaatgaaaagaactgaatccactgttcccattttcaatatggaagatat 569
Query: 290 agaagagggcgttgaaggatatgatgatgagaggtcacttcttatgtcccagaagagtct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agaagagggcgttgaaggatatgatgatgagaggtcacttcttatgtcccagaagagtct 509
Query: 350 agaaaagcgttttggtcagtcaccagtttttattgcggccaccttcatggaacagggagg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agaaaagcgttttggtcagtcaccagtttttattgcggccaccttcatggaacagggagg 449
Query: 410 cattccaccatcaaccaattctgcttctcttttgaaagaagccattcatgtaattagttg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cattccaccatcaaccaattctgcttctcttttgaaagaagccattcatgtaattagttg 389
Query: 470 tggatatgaagacaagacagaatggggcaaagagattggatggatctacggttctgtgac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tggatatgaagacaagacagaatggggcaaagagattggatggatctacggttctgtgac 329
Query: 530 agaagatattttaactgggtttaagatgcatgcacgtggttggatatcaatctattgtat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agaagatattttaactgggtttaagatgcatgcacgtggttggatatcaatctattgtat 269
Query: 590 gcctccacgcccagcatttaaggggtctgctcctatcaatctttctgatcggttgaacca 649
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcctccacgcccagcatttaa-gggtctgctcctatcaatctttctgatcggttgaacca 210
Query: 650 ggtgcttcggtgggccttgggatcaattgaaattttgctgagcaggcattgtccaatatg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggtgcttcggtgggccttgggatcaattgaaattttgctgagcaggcattgtccaatatg 150
Query: 710 gtatggttacaatggaaaattgaagctccttgagaggttggcatacattaataccattgt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gtatggttacaatggaaaattgaagctccttgagaggttggcatacattaataccattgt 90
Query: 770 gtacccactgacctctatcccactgatcgcttactgtat 808
|||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gtacccactgacctctatcccactgatcgcttactgtat 51
Score = 125 bits (63), Expect = 2e-28
Identities = 86/90 (95%), Gaps = 4/90 (4%)
Strand = Plus / Minus
Query: 20 aaacatgctatgtacaattcccctacaacgttttgatggtcattgatttgctacgatcga 79
|||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 902 aaacatgctatgtacaattccc--acaacgttttgatgg-cattgatttgc-acgatcga 847
Query: 80 tatgccaatcgtaatattgtgttctttgat 109
||||||||||||||||||||||||||||||
Sbjct: 846 tatgccaatcgtaatattgtgttctttgat 817
>KJC_c00976
Length = 1696
Score = 165 bits (83), Expect = 2e-40
Identities = 227/275 (82%)
Strand = Plus / Minus
Query: 444 aaagaagccattcatgtaattagttgtggatatgaagacaagacagaatggggcaaagag 503
||||| || |||||||| || || ||||| ||||| ||||| ||||| ||||| | |||
Sbjct: 586 aaagaggctattcatgttatcagctgtgggtatgaggacaaaacagattggggaagcgag 527
Query: 504 attggatggatctacggttctgtgacagaagatattttaactgggtttaagatgcatgca 563
|||||||||||||| |||||||| |||||||||||| | ||||| ||||||||||||||
Sbjct: 526 attggatggatctatggttctgttacagaagatattcttactggatttaagatgcatgcc 467
Query: 564 cgtggttggatatcaatctattgtatgcctccacgcccagcatttaaggggtctgctcct 623
||||||||| ||||| || || ||||| || ||||| ||||| |||||||||||
Sbjct: 466 cgtggttggcggtcaatttactgcatgcccaagcgtccagcttttaaagggtctgctccc 407
Query: 624 atcaatctttctgatcggttgaaccaggtgcttcggtgggccttgggatcaattgaaatt 683
|| |||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | ||||||
Sbjct: 406 attaatctttcagatcgtttgaaccaagtgcttcgatgggctttgggttcagtggaaatt 347
Query: 684 ttgctgagcaggcattgtccaatatggtatggtta 718
| | || ||||||||||||| |||||||||||
Sbjct: 346 cttttcagtcggcattgtccaatttggtatggtta 312
Score = 50.1 bits (25), Expect = 8e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 259 ccactgttcccattttcaatatggaagatatagaagagggcgttgaagg 307
||||||| || ||||||| ||||||||||||||||||| ||||||||
Sbjct: 777 ccactgtgccaattttcagcctggaagatatagaagagggggttgaagg 729
>KJC_c03564
Length = 947
Score = 79.8 bits (40), Expect = 9e-15
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 444 aaagaagccattcatgtaattagttgtggatatgaagacaagacagaatggggcaaagag 503
||||||||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||||
Sbjct: 371 aaagaagccatccatgttattagctgtggctatgaagataaaacagaatggggtaaagag 312
Query: 504 attggatggatctacggttc 523
|||||||||| || |||||
Sbjct: 311 gttggatggatttatggttc 292
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 74 gatcgatatgccaatcgtaatattgtgttctttgat 109
||||||||||||||||| |||||||| |||||||||
Sbjct: 820 gatcgatatgccaatcggaatattgtattctttgat 785