Jatropha Genome Database

JcCB0272031.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0272031.10 + phase: 1 /partial/short
         (137 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01330                                                            272   2e-73
KJC_s14350                                                            129   2e-30

>KJC_c01330 
          Length = 1636

 Score =  272 bits (137), Expect = 2e-73
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    ctatatggagccatttgctgaggaattttgaaatggagctggtatctcctttccctgaga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 ctatatggagccatttgctgaggaattttgaaatggagctggtatctcctttccctgaga 1509

                                                                        
Query: 61   ttgactggaacgcaatggttgtgggtgtaaaaggaaaggtgatggtgcgttacaagcgcc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 ttgactggaacgcaatggttgtgggtgtaaaaggaaaggtgatggtgcgttacaagcgcc 1569

                             
Query: 121  gggagctttcagttgac 137
            |||||||||||||||||
Sbjct: 1570 gggagctttcagttgac 1586


>KJC_s14350 
          Length = 529

 Score =  129 bits (65), Expect = 2e-30
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatatggagccatttgctgaggaattttgaaatggagctggtatctcctttccctgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  ctatatggagccatttgctgaggaattttgaaatggagctggtatctcctttccctgaga 146

                
Query: 61  ttgac 65
           |||||
Sbjct: 147 ttgac 151