Jatropha Genome Database

JcCB0263871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0263871.10 + phase: 0 
         (645 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06864                                                            105   1e-22
KJC_c10582                                                             66   1e-10

>KJC_c06864 
          Length = 562

 Score =  105 bits (53), Expect = 1e-22
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                       
Query: 248 gaggagtaagaaagcggccttgggggaaatatgcggcggaaatcagagattcgacgagaa 307
           |||||||||||||| |||| ||||| || || || || ||||| ||||||||||| ||||
Sbjct: 261 gaggagtaagaaagaggccatggggaaagtacgccgccgaaataagagattcgaccagaa 202

                                                                       
Query: 308 atggagttagagtttggttaggaacatttgataaagctgaggatgcagccttagcttatg 367
           ||||  | ||||||||||||||||| |||||||  || ||||  ||||| ||||||||||
Sbjct: 201 atggtatcagagtttggttaggaacttttgatagcgcagaggcggcagctttagcttatg 142

                        
Query: 368 atcaagctgcatt 380
           ||||||| |||||
Sbjct: 141 atcaagcagcatt 129


>KJC_c10582 
          Length = 812

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 117/145 (80%)
 Strand = Plus / Minus

                                                                       
Query: 248 gaggagtaagaaagcggccttgggggaaatatgcggcggaaatcagagattcgacgagaa 307
           |||| ||||| | |||||| ||||| ||||  |||||||| || |||||||| || ||  
Sbjct: 258 gaggtgtaaggaggcggccatggggaaaattcgcggcggagataagagattcaactaggc 199

                                                                       
Query: 308 atggagttagagtttggttaggaacatttgataaagctgaggatgcagccttagcttatg 367
           ||||| | ||||| |||||||| ||||||||||  || ||||  || || |||||||| |
Sbjct: 198 atggaataagagtatggttagggacatttgatagcgcagaggcagctgctttagcttacg 139

                                    
Query: 368 atcaagctgcattagcaatgagagg 392
           |||||||||| ||  ||||||||||
Sbjct: 138 atcaagctgctttttcaatgagagg 114