Jatropha Genome Database

JcCB0252341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0252341.10 + phase: 1 /partial
         (302 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00356                                                            494   e-140
KJC_s14237                                                            222   4e-58
KJC_c00404                                                            105   6e-23

>KJC_c00356 
          Length = 959

 Score =  494 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 54  gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 429

                                                                       
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 369

                                                                       
Query: 174 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 309

                                                                       
Query: 234 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 249

                    
Query: 294 ggggctgcc 302
           |||||||||
Sbjct: 248 ggggctgcc 240


>KJC_s14237 
          Length = 424

 Score =  222 bits (112), Expect = 4e-58
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 54  gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 151

                                                               
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctg 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctg 203


>KJC_c00404 
          Length = 878

 Score =  105 bits (53), Expect = 6e-23
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                       
Query: 186 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 245
           |||||||| || |||||||| |||||| | ||||||||||| ||  ||||||||||||| 
Sbjct: 300 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 241

                                                            
Query: 246 ctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 294
           || |||||||| |||||||||||||| | ||||||||||||||| ||||
Sbjct: 240 cttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctg 192