Jatropha Genome Database

JcCB0250351.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0250351.20 - phase: 2 /partial
         (1000 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06534                                                             74   7e-13

>KJC_c06534 
          Length = 1439

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                       
Query: 709 caaaaaatactgggggcaggatgcaaacgagtttaatccaagtaggtttgcgaatgggat 768
           |||||||||||||||  | |||||| | || |||||||||   || ||||| || ||| |
Sbjct: 348 caaaaaatactggggagacgatgcagatgaatttaatccattcagatttgcaaacggggt 289

                                                                       
Query: 769 ctctaaggctgcaaaacacccaaatgcttttattgcctttggaatgggtccaagaacttg 828
           ||| || ||||| |||||||||||||||||  ||| ||||||||||||||| |||  |||
Sbjct: 288 ctcaaaagctgcgaaacacccaaatgctttccttggctttggaatgggtcccagagtttg 229

                                        
Query: 829 tgttggtcagaatttcgctatgctagaag 857
             |||| |||||||| || ||||| ||||
Sbjct: 228 cattggccagaattttgcgatgcttgaag 200



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                        
Query: 49   aaagctcacttcagatattatagcccatactgcgtttggtagtagctattctcgaggaaa 108
            |||||||||||| ||||| || ||||| ||||| ||||| |||||||||  || ||||||
Sbjct: 1013 aaagctcacttctgatataattgcccacactgcatttggcagtagctatgttcaaggaaa 954

                                             
Query: 109  agaagcctttgaagcacaaaatgagcttcaaca 141
            |||||| ||| | |||||||| ||||| |||||
Sbjct: 953  agaagcttttaatgcacaaaaggagctccaaca 921